miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 11 tacttcctccgtcccacagtgtaagatgtttttgcaagttgttttagcttgcaaaaacgt 70
|||||| ||||||||| | ||||| | ||||||||||| | | |||| ||| ||||||||
Sbjct: 5 tacttcttccgtcccataatgtaatacgtttttgcaagctatgttagtttgtaaaaacgt 64
Query: 71 cttacattatgagacggagggagta 95
||||||||||| || |||||||||
Sbjct: 65 cttacattatgggatagagggagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 55 tagcttgcaaaaacgtcttacattatgagacgga 88
|||||||||||||||| |||||||||| ||||||
Sbjct: 45 tagcttgcaaaaacgtattacattatgggacgga 12
>RF00906;MIR1122;AY196347.1/5474-5564 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 11 tacttcctccgtcccacagtgtaagatgtttttgcaagttgttttagcttgcaaa 65
|||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||
Sbjct: 87 tactccctccgtcccacaatataagatgtttttgcaagtttgtttaacttgcaaa 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 58 cttgcaaaaacgtcttacattatgagacggagggagta 95
||||||||||| ||||| ||| || |||||||||||||
Sbjct: 50 cttgcaaaaacatcttatattgtgggacggagggagta 87
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 63 aaaaacgtcttacattatgagacggagggagtaa 96
||||||||||||||||||||||| ||||||||||
Sbjct: 37 aaaaacgtcttacattatgagacagagggagtaa 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
||||| ||||||||||||| |||||||||||||
Sbjct: 58 aaaaatgtcttacattatgggacggagggagta 90
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
||||||||||||||||||| |||||||||||||
Sbjct: 57 aaaaacgtcttacattatgggacggagggagta 89
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
||||||||||||||||||| |||||||||||||
Sbjct: 37 aaaaacgtcttacattatgggacggagggagta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
||||||||| ||||||||| |||||||||||||
Sbjct: 75 aaaaacgtcctacattatgggacggagggagta 107
>RF00906;MIR1122;EU200767.1/2385-2293 37682:Aegilops tauschii
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 11 tacttcctccgtcccacagtgtaagatgtttttgcaagttgttttagcttgcaaaaacgt 70
|||| ||||||||||| | | ||||| ||||||||| | | |||||||||||||| ||
Sbjct: 89 tactccctccgtcccataatataagaccattttgcaagctatgttagcttgcaaaaaggt 30
Query: 71 cttacattatgagacggagggagta 95
|||| |||||| || ||||||||||
Sbjct: 29 cttatattatgggagggagggagta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 55 tagcttgcaaaaacgtcttacattatgagacggagggagta 95
|||||||||||| |||||| |||||| |||||||||||||
Sbjct: 49 tagcttgcaaaatggtcttatattatgggacggagggagta 89
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagggagtaa 96
||||||||||||||||||| |||||||| |||||
Sbjct: 59 aaaaacgtcttacattatgggacggaggaagtaa 92
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
|||||| |||||||||||| |||||||||||||
Sbjct: 37 aaaaacctcttacattatgggacggagggagta 5
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
|||| |||||||||||||| |||||||||||||
Sbjct: 37 aaaagcgtcttacattatgggacggagggagta 5
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 63 aaaaacgtcttacattatgagacggagggagta 95
||||||||||||||||||| |||||||| ||||
Sbjct: 37 aaaaacgtcttacattatgggacggaggaagta 5
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 64 aaaacgtcttacattatgagacggagggagta 95
|||||||||||||||||| |||||||||||||
Sbjct: 49 aaaacgtcttacattatg-gacggagggagta 79
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagg 90
||||||||||||||||||| ||||||||
Sbjct: 64 aaaaacgtcttacattatgggacggagg 91
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagg 90
||||||||||||||||||| ||||||||
Sbjct: 35 aaaaacgtcttacattatgggacggagg 62
>RF00906;MIR1122;AP005261.4/109260-109376 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 64 aaaacgtcttacattatgagacggagggagta 95
|||| |||||||||||||| ||||||||||||
Sbjct: 36 aaaaagtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AAAA02005618.1/85725-85886 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagtaa 96
|||||||||||||| |||||||||||||
Sbjct: 132 gtcttacattatgaaacggagggagtaa 159
>RF00906;MIR1122;AAAA02004418.1/2515-2382 39946:Oryza sativa
Indica Group
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 cttacattatgagacggagggagtaata 98
|||| |||||||||||||||||||||||
Sbjct: 29 cttatattatgagacggagggagtaata 2
>RF00906;MIR1122;AC093953.2/28747-28908 39947:Oryza sativa Japonica
Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagtaa 96
|||||||||||||| |||||||||||||
Sbjct: 132 gtcttacattatgaaacggagggagtaa 159
>RF00906;MIR1122;AAAA02015039.1/73812-73973 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 64 aaaacgtcttacattatgagacggagggagta 95
|||| |||||||||||||| ||||||||||||
Sbjct: 36 aaaaagtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AACV01010647.1/16392-16231 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 64 aaaacgtcttacattatgagacggagggagta 95
|||| |||||||||||||| ||||||||||||
Sbjct: 127 aaaaagtcttacattatgaaacggagggagta 158
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aaaacgtcttacattatgagacggagg 90
|||||||||||||||||| ||||||||
Sbjct: 65 aaaacgtcttacattatgggacggagg 91
>RF00906;MIR1122;AACV01006898.1/39166-39311 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 31 gtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AAAA02006450.1/4529-4668 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 tacattatgagacggagggagta 95
|||||||||||||||||||||||
Sbjct: 27 tacattatgagacggagggagta 5
>RF00906;MIR1122;AAAA02014181.1/4882-4767 39946:Oryza sativa Indica
Group
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 86 gtcttacattatgaaacggagggagta 112
>RF00906;MIR1122;ABRL01000382.1/8325-8450 65489:Oryza barthii
Length = 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 96 gtcttacattatgaaacggagggagta 122
>RF00906;MIR1122;AAAA02008053.1/17150-17309 39946:Oryza sativa
Indica Group
Length = 160
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 130 gtcttacattatgaaacggagggagta 156
>RF00906;MIR1122;AAAA02023717.1/13397-13545 39946:Oryza sativa
Indica Group
Length = 149
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tacattatgagacggagggagta 95
|||||||||||||||||||||||
Sbjct: 123 tacattatgagacggagggagta 145
>RF00906;MIR1122;AC120529.3/33430-33575 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 31 gtcttacattatgaaacggagggagta 5
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 116 gtcttacattatgaaacggagggagta 142
>RF00906;MIR1122;AAAA02006407.1/37604-37445 39946:Oryza sativa
Indica Group
Length = 160
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 31 gtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AAAA02005800.1/23183-23322 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 tcttacattatgagacggagggagtaa 96
||||| |||||||||||||||||||||
Sbjct: 111 tcttatattatgagacggagggagtaa 137
>RF00906;MIR1122;AP003932.3/46760-46610 39947:Oryza sativa Japonica
Group
Length = 151
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 121 gtcttacattatgaaacggagggagta 147
>RF00906;MIR1122;AC140005.2/42932-42813 39947:Oryza sativa
Japonica Group
Length = 120
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 76 attatgagacggagggagtaata 98
|||||||||||||||||||||||
Sbjct: 24 attatgagacggagggagtaata 2
>RF00906;MIR1122;AL663005.3/79671-79830 39947:Oryza sativa
Japonica Group
Length = 160
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 31 gtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AAAA02029549.1/21613-21774 39946:Oryza sativa
Indica Group
Length = 162
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 31 gtcttacattatgaaacggagggagta 5
>RF00906;MIR1122;AC137589.2/147211-147089 39947:Oryza sativa
Japonica Group
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 76 attatgagacggagggagtaata 98
|||||||||||||||||||||||
Sbjct: 24 attatgagacggagggagtaata 2
>RF00906;MIR1122;AACV01015348.1/13831-13958 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 98 gtcttacattatgaaacggagggagta 124
>RF00906;MIR1122;AAAA02022635.1/21983-21840 39946:Oryza sativa
Indica Group
Length = 144
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 114 gtcttacattatgaaacggagggagta 140
>RF00906;MIR1122;AP005729.3/123154-122993 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagta 95
|||||||||||||| ||||||||||||
Sbjct: 132 gtcttacattatgaaacggagggagta 158
>RF00906;MIR1122;EF115142.1/468-377 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 aaaaacgtcttacattatgagacggagggagtaa 96
|||||||||||| |||||| |||||||||||||
Sbjct: 56 aaaaacgtcttatattatgttacggagggagtaa 89
>RF00906;MIR1122;AJ507395.1/8084-8185 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 66 aacgtcttacattatgagacggagggagta 95
||||||||| |||||| |||||||||||||
Sbjct: 34 aacgtcttatattatgggacggagggagta 5
>RF00906;MIR1122;AAAA02014011.1/23143-23002 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 114 cttacattatgaaacggagggagtaa 139
>RF00906;MIR1122;AAAA02004745.1/86622-86461 39946:Oryza sativa
Indica Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 29 cttacattatgaaacggagggagtaa 4
>RF00906;MIR1122;AAAA02003204.1/17037-17198 39946:Oryza sativa
Indica Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 134 cttacattatgaaacggagggagtaa 159
>RF00906;MIR1122;AC210492.2/95445-95606 4538:Oryza glaberrima
(African rice)
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 69 gtcttacattatgagacggagggagtaata 98
|||||||||| ||| |||||||||||||||
Sbjct: 132 gtcttacattgtgaaacggagggagtaata 161
>RF00906;MIR1122;AP002866.1/46564-46725 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 134 cttacattatgaaacggagggagtaa 159
>RF00906;MIR1122;AP005383.3/77876-77739 39947:Oryza sativa Japonica
Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 tcttacattatgagacggagggagta 95
||||| ||||||||||||||||||||
Sbjct: 109 tcttatattatgagacggagggagta 134
>RF00906;MIR1122;AAAA02025818.1/4289-4148 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 29 cttacattatgaaacggagggagtaa 4
>RF00906;MIR1122;AP004801.3/81541-81678 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 71 cttacattatgagacggagggagtaa 96
|||||||||||| |||||||||||||
Sbjct: 29 cttacattatgaaacggagggagtaa 4
