miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAEU02000204.1/890859-890965 7245:Drosophila
yakuba
Length = 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tgctgctgctgctgttgctcttgttgctg 87
||||||||||||||||||| |||||||||
Sbjct: 4 tgctgctgctgctgttgctgttgttgctg 32
>RF01059;mir-598;AAPU01011572.1/61722-61816 7230:Drosophila
mojavensis
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 62 tgctgctgctgttgctcttgttgctgtt 89
|||||||||||||||| |||||||||||
Sbjct: 4 tgctgctgctgttgctgttgttgctgtt 31
>RF01059;mir-598;AAEU02000733.1/12793-12676 7245:Drosophila yakuba
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 59 tgctgctgctgctgttgctcttgttgctgtt 89
||||| ||||||||||||| |||||||||||
Sbjct: 22 tgctgttgctgctgttgctgttgttgctgtt 52
>RF01059;mir-598;AE014298.4/13809037-13809133 7227:Drosophila
melanogaster (fruit fly)
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 57 gctgctgctgctgctgttgctcttgttgctg 87
||||||||||||||||||||| ||| |||||
Sbjct: 11 gctgctgctgctgctgttgctgttgctgctg 41
>RF01059;mir-598;AAPT01021373.1/4661-4797 7222:Drosophila
grimshawi
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 57 gctgctgctgctgctgttgctcttgttgctg 87
||||||||||||||||||||| ||||||||
Sbjct: 8 gctgctgctgctgctgttgctgctgttgctg 38
>RF01059;mir-598;AM269894.1/1018604-1018469 5802:Eimeria tenella
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 57 gctgctgctgctgctgttgctcttgttgctg 87
||||||||||||||||||||| ||||||||
Sbjct: 5 gctgctgctgctgctgttgctgctgttgctg 35
>RF01059;mir-598;AAPT01020541.1/108653-108537 7222:Drosophila
grimshawi
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 cgctgctgctgctgctgttgct 77
||||||||||||||||||||||
Sbjct: 111 cgctgctgctgctgctgttgct 90
>RF01059;mir-598;AAPT01009800.1/1421-1302 7222:Drosophila
grimshawi
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 gccgctgctgctgctgctgttg 75
||||||||||||||||||||||
Sbjct: 11 gccgctgctgctgctgctgttg 32
