miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 109 bits (55), Expect = 9e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || |||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 8 tccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgctctt 67
Query: 82 atagttctttacagagggagtac 104
||| ||||||| |||||||||||
Sbjct: 68 atatttctttatagagggagtac 90
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 32 aagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttcttt 91
||||||||||||||| ||||||| |||| ||||| | |||| ||||||||| ||||||
Sbjct: 76 aagaaatataagagcatttagataactactttagtgctctaaacgctcttatatttcttt 17
Query: 92 acagagggagtac 104
|| ||||||||||
Sbjct: 16 accgagggagtac 4
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 86 tccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctctt 27
Query: 82 atagttctttacagagggagta 103
||| | |||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| || ||||||||| ||||||| |||||||||||||| |||||||| |
Sbjct: 22 aatataagagcattcagatcactactttagtgatctaaatgctcttatatttctttacgg 81
Query: 96 agggagta 103
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 5e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 32 aagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttcttt 91
||||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||||
Sbjct: 18 aagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttatatttcttt 77
Query: 92 acagaggg 99
||||||||
Sbjct: 78 acagaggg 85
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 23 ccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctta 82
||||| || |||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 83 tagttctttacagagggagta 103
|| ||||||||||||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| |||||||||||| |||||||||||||||||||| || |||||| ||||
Sbjct: 8 tccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatgatctt 67
Query: 82 atagttctttacagagggagta 103
||| ||||||||||||||||||
Sbjct: 68 atatttctttacagagggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || ||||||||||||| | ||||||| |||| ||||||| |||| ||||
Sbjct: 86 tccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacattctt 27
Query: 82 atagttctttacagagggagtac 104
||| |||| ||| ||||||||||
Sbjct: 26 atatttctgtacggagggagtac 4
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 32 aagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttcttt 91
||||||||||||||||| ||||||||||||||||| || |||| |||||||| ||||||
Sbjct: 18 aagaaatataagagcgtctagatcactaaagtagttatctaaacactcttatatttcttt 77
Query: 92 acagagggagta 103
|| |||||||||
Sbjct: 78 acggagggagta 89
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| |||||||||||||| |||||||| |||| ||||||| || | ||||||
Sbjct: 86 tccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgctctt 27
Query: 82 atagttctttacagagggagtac 104
||| ||||||||||| |||||||
Sbjct: 26 atatttctttacagaaggagtac 4
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 47 gtttagatcactaaagtagtgatgtaaatgctcttatagttctttacagagggagtacc 105
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtacc 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcacta 59
|||||| || |||||||||||||| |||||||||||||
Sbjct: 84 tccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctctt 67
Query: 82 atagttctttacagagggagta 103
||| | |||||||||| ||||
Sbjct: 68 atattagtttacagaggaagta 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| |||||||||||| |||||| |||| ||||||||| | ||||| |
Sbjct: 72 aatataagagcatttagatcactattttagtgacctaaacgctcttatattagtttacgg 13
Query: 96 agggagtac 104
|||||||||
Sbjct: 12 agggagtac 4
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 32 aagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttcttt 91
|||||||||||||| || |||||||||||||||||||| |||| ||||||||| || |||
Sbjct: 76 aagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgttt 17
Query: 92 acagag 97
||||||
Sbjct: 16 acagag 11
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aaatataagagcgtttagatcacta 59
|||||||||||||||||||||||||
Sbjct: 21 aaatataagagcgtttagatcacta 45
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum (bread
wheat)
Length = 92
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 35 aaatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttaca 94
||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||||
Sbjct: 73 aaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttctttacg 14
Query: 95 gagggagta 103
|||||||||
Sbjct: 13 gagggagta 5
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcacta 59
||||||||| ||||||||||||||||||||| ||||||
Sbjct: 8 tccctccgtaaagaaatataagagcgtttaggtcacta 45
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttata 84
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 22 aatataagagcgtttagatcactaaagtagtgatctaaacgctcttata 70
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||||||||||||||| ||||||| |||| ||||||||| | |||||||
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 96 agggagta 103
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 79.8 bits (40), Expect = 8e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||| ||||||||||||||||||||| ||| ||||||||| | |||||||
Sbjct: 72 aatataagagcgcttagatcactaaagtagtgatctaagcgctcttatattagtttacag 13
Query: 96 agggagta 103
||||||||
Sbjct: 12 agggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||| ||||||||||| ||||||| ||| ||||||||| | |||||||
Sbjct: 22 aatataagagcgcttagatcactactttagtgatctaagcgctcttatattagtttacag 81
Query: 96 agggagta 103
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 79.8 bits (40), Expect = 8e-15
Identities = 72/83 (86%), Gaps = 6/83 (7%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || ||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 8 tccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgctctt 61
Query: 82 atagttctttacagagggagtac 104
||| |||||||||||||||||||
Sbjct: 62 atatttctttacagagggagtac 84
Score = 77.8 bits (39), Expect = 3e-14
Identities = 71/82 (86%), Gaps = 6/82 (7%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || |||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 80 tccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgctctt 27
Query: 82 atagttctttacagagggagta 103
||| ||||||||||||||||||
Sbjct: 26 atatttctttacagagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || |||||||||||||||||||||||||||| ||| ||| |||| || |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 82 atagttctttacagagggagtac 104
||| || ||||||||||||||||
Sbjct: 26 atatttgtttacagagggagtac 4
Score = 77.8 bits (39), Expect = 3e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
|||||| || || ||||||||| ||||||||||| ||||| ||||||| |||| ||||||
Sbjct: 8 tccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgctctt 67
Query: 82 atagttctttacagaggga 100
||| |||||||| ||||||
Sbjct: 68 atatttctttactgaggga 86
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || |||||||||||||||||| |||||| ||||||| |||| ||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctctt 27
Query: 82 atagttctttacagagggagtac 104
||| | ||||||||||||||||
Sbjct: 26 atattagtttacagagggagtac 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcacta 59
||||||||||||||||||||||||
Sbjct: 22 aatataagagcgtttagatcacta 45
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctctt 27
Query: 82 atagttctttacagagggagta 103
||| | |||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| |||||||||||||| |||| || |||| ||||||||| | ||||| |
Sbjct: 22 aatataagagcatttagatcactaaaatagtaatctaaacgctcttatattagtttacgg 81
Query: 96 agggagta 103
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 38 tataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacagag 97
||||||||||||||||||||||||||||| || |||| ||||||||| | ||||| |||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 98 ggagta 103
||||||
Sbjct: 10 ggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||||||||||||| |||| ||||||| |||| ||||||
Sbjct: 8 tccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgctctt 67
Query: 82 atagttctttacagagggagta 103
||||| |||||||| ||||||
Sbjct: 68 atagtagtttacagacggagta 89
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||| | |||||||||||||||||||||| |||| | ||||||| | |||||||
Sbjct: 22 aatataagaccttttagatcactaaagtagtgatctaaaaggtcttatattagtttacag 81
Query: 96 agggagtac 104
|||||||||
Sbjct: 82 agggagtac 90
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||||||||||| |||||||||||| | |||||||| ||||| | |||||||
Sbjct: 22 aatataagagcgtttagattactaaagtagtgttctaaatgcttttatattagtttacag 81
Query: 96 agggagtac 104
||||||||
Sbjct: 82 ggggagtac 90
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 73.8 bits (37), Expect = 5e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||| ||||||||||||| ||| |||||||| |||||||||||||| | |||||||
Sbjct: 22 aatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagtttacag 80
Query: 96 agggagtac 104
|||||||||
Sbjct: 81 agggagtac 89
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 21 ttccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctct 80
|||||||||| || |||||||||||||||||| ||||||||| |||| |||||||| |
Sbjct: 7 ttccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgcttt 66
Query: 81 tatagttctttacagagggagtac 104
|||| | |||||| |||||||||
Sbjct: 67 tatattagtttacaaagggagtac 90
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||||||||||||||||| ||||||| ||| |||||||| | ||||| |
Sbjct: 72 aatataagagcgtttagatcactaaaatagtgatcaaaacactcttatattaatttacgg 13
Query: 96 agggagtacc 105
||||||||||
Sbjct: 12 agggagtacc 3
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttata 84
||||||||||||||| |||||||||| ||||||| |||| |||||||||
Sbjct: 22 aatataagagcgtttggatcactaaaatagtgatctaaacgctcttata 70
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||||||||||||||| ||||||| ||| ||||||||| | |||||||
Sbjct: 72 aatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatttacag 13
Query: 96 agggagta 103
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||| ||||||||||||||| ||||| | |||| ||||||||| | ||||| |
Sbjct: 22 aatataagagtgtttagatcactaaaatagtgttctaaacgctcttatattagtttacgg 81
Query: 96 agggagta 103
||||||||
Sbjct: 82 agggagta 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || |||||||||||||||||| ||||| ||||||| |||| |||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactctt 27
Query: 82 atagttctttacagagggagtac 104
||| | |||| |||||||||||
Sbjct: 26 atattggtttatagagggagtac 4
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| ||||||| | |||| ||||||| |||||||| ||||| | |||||||
Sbjct: 72 aatataagagcatttagattattaaaatagtgatctaaatgcttttatattagtttacag 13
Query: 96 agggagta 103
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||||||||||||||| || |||| |||||||||||||| | ||||| |
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 96 agggagta 103
||||||||
Sbjct: 127 agggagta 134
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||||| ||||||||| |||| ||||||| |||| ||||||
Sbjct: 131 tccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctctt 72
Query: 82 ata 84
|||
Sbjct: 71 ata 69
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 63.9 bits (32), Expect = 5e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||| ||| ||||||||||||| |||||||| |||||||||||||| | ||||| |
Sbjct: 21 aatataaaagcatttagatcactaa-gtagtgatctaaatgctcttatattagtttacgg 79
Query: 96 agggagta 103
||||||||
Sbjct: 80 agggagta 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||||| ||||||||||| | ||||||| |||||||| ||
Sbjct: 84 tccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaatgctttt 26
Query: 82 atagttctttacagagg 98
||| | ||||||||||
Sbjct: 25 atattagtttacagagg 9
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaa 74
||||||||||| |||||||||||||||||||||| ||||
Sbjct: 22 aatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 48 tttagatcactaaagtagtgatgtaaatgctcttatagttctttacagagggagtac 104
|||||||||||| ||||||| |||| ||||||||| | ||||||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || |||||||||| ||||||||||||| || |||| |||||||||||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctctt 67
Query: 82 atagttctttacagagggagta 103
||| | ||||| |||||||||
Sbjct: 68 atattagtttaccgagggagta 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| |||| |||| |||| ||||||| |||| |||||||| | ||||| |
Sbjct: 72 aatataagagcatttaaatcattaaaatagtgatctaaacactcttatattagtttacgg 13
Query: 96 agggagta 103
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||| |||||||||| |||||| ||||||| |||| | ||||
Sbjct: 8 tccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttctt 67
Query: 82 atagttctttacagagggagta 103
||| | |||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 61/71 (85%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcacta---aagtagtgatgtaaatgctcttatagttcttta 92
|||||||||||||||||||||||| ||||||||| |||| ||||| ||| || || |
Sbjct: 75 aatataagagcgtttagatcactagagtagtagtgatctaaacgctctcatatttattca 16
Query: 93 cagagggagta 103
|||||||||||
Sbjct: 15 cagagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcacta 59
|||||| ||||| |||||| ||||||||||||||||||
Sbjct: 8 tccctctgtgaataaatatgagagcgtttagatcacta 45
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 61/71 (85%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 26 tccgtgaagaaatataagagcgtttagatcactaa---agtagtgatgtaaatgctctta 82
||||| |||||||| |||||||| ||||||||||| ||||||||| |||| | |||||
Sbjct: 85 tccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaacgttctta 26
Query: 83 tagttctttac 93
|| ||||||||
Sbjct: 25 tatttctttac 15
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 26 tccgtgaagaaatataagagcgtttagatcacta 59
||||| ||||||||||||| ||||||||||||||
Sbjct: 12 tccgtaaagaaatataagaacgtttagatcacta 45
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagt 66
|||||| || ||||||||||||| |||||||||||||||| ||||
Sbjct: 8 tccctctgtaaagaaatataagatcgtttagatcactaaaatagt 52
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 63 tagtgatgtaaatgctcttatagttctttacagagggagta 103
||||||| |||| | ||||||| ||||||||||||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 56.0 bits (28), Expect = 1e-07
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaa--agtagtgatgtaaatgctcttatagttctttac 93
||||||||| | ||||||||||||| ||||||||| |||| | ||||||| | |||||
Sbjct: 22 aatataagaccttttagatcactaagtagtagtgatctaaaaggtcttatattagtttac 81
Query: 94 agagggagtac 104
|||||||||||
Sbjct: 82 agagggagtac 92
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || |||||||||| |||||||| |||| ||||||| |||||| | ||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgttttt 67
Query: 82 atagttctttacagagggagtac 104
||| | ||||||||||||||||
Sbjct: 68 atattagtttacagagggagtac 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 48 tttagatcactaaagtagtgatgtaaatgctcttatagttctttacagagggagta 103
||||||||||||||||||| || |||| |||||||| | ||||| |||||||||
Sbjct: 60 tttagatcactaaagtagtaatctaaacactcttatattagtttacggagggagta 5
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 63 tagtgatgtaaatgctcttatagttctttacagagggag 101
||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 78 tcttatagttctttacagagggagta 103
||||||| ||||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcacta 59
|||||| || ||||||||||||| | ||||||||||||
Sbjct: 75 tccctctgtaaagaaatataagatcatttagatcacta 38
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 22 tccctccgtgaagaaatataagagcgtttagatcactaaagtagtgatgtaaatgctctt 81
||||||||| || ||||||||| | ||||||| ||| |||||||| | |||||||||||
Sbjct: 8 tccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctctt 67
Query: 82 ata 84
|||
Sbjct: 68 ata 70
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtga 68
||||||||||| |||||||||||||| ||||||
Sbjct: 22 aatataagagcatttagatcactaaaatagtga 54
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
||||||||||| |||||| ||||| |||| || ||||| |||||||| | |||||||
Sbjct: 72 aatataagagcatttagaacactattttagtaatctaaatactcttatattagtttacag 13
Query: 96 agggagtac 104
|||||||||
Sbjct: 12 agggagtac 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttata 84
|||||||||| ||||||| |||||| ||||| | ||||||||||||||
Sbjct: 22 aatataagagtatttagattactaaaatagtgttctaaatgctcttata 70
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaaagtagtgatgtaaatgctcttatagttctttacag 95
|||||||||||||| |||||| |||| | ||||| |||| |||||||| | ||||| |
Sbjct: 22 aatataagagcgttgagatcattaaaattgtgatctaaactctcttatattagtttacgg 81
Query: 96 agggagt 102
|||||||
Sbjct: 82 agggagt 88
