miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 93.7 bits (47), Expect = 4e-19
Identities = 67/71 (94%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 agacagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtg 60
||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct: 9 agacagtgcagtcatccataaagtagaaagcactact-aaccatccaa-tcagtgtagtg 66
Query: 61 tttcctacttt 71
|||||||||||
Sbjct: 67 tttcctacttt 77
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 77.8 bits (39), Expect = 2e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaac 41
|||||||||||||||||||||||||||||||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaac 49
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 73.8 bits (37), Expect = 3e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 agacagtgcagtcatccataaagtagaaagcactactaaac 41
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9 agacagtgcagtcacccataaagtagaaagcactactaaac 49
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
|||||||||||| ||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 63 tcctacttt 71
|||||||||
Sbjct: 71 tcctacttt 79
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 69.9 bits (35), Expect = 5e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 agacagtgcagtcatccataaagtagaaagcactactaa 39
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 9 agacagtgcagtcacccataaagtagaaagcactactaa 47
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaa 39
|||||||||||| ||||||||||||||||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaa 47
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaaac 41
||||||| | ||||||||||||||||||||||||||||||
Sbjct: 10 gacagtggactcatccataaagtagaaagcactactaaac 49
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 11 gtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtttcctactt 70
|||| |||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 71 t 71
|
Sbjct: 79 t 79
