miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtattt 79
||||||||||||||||||| ||||||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttacagagggagtattt 2
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtat 77
|||||||||||||||||| |||||||||||||||||
Sbjct: 39 tctaaacgctcttatatttctttacagagggagtat 4
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||| ||||||||||||||||
Sbjct: 49 tctaaacgctcttatatttctttacagagggagta 83
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtattta 80
||||| ||||||||||||| |||||||||||||||||||
Sbjct: 39 tctaagcgctcttatattagtttacagagggagtattta 1
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||| ||||||||||||| |||||||||||||||
Sbjct: 55 tctaagcgctcttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||||||||||||| |||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||||||||||||| |||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttacagagggagta 5
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 ttctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||||| ||||| |||||||||
Sbjct: 54 ttctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 43 ctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||| |||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagtat 77
|||||| |||||||||||| ||||| ||||||||||
Sbjct: 100 tctaaatgctcttatattagtttacggagggagtat 135
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 aaacgctcttatattactttacagagggagta 76
|||||||||||||||| |||||||||||||||
Sbjct: 65 aaacgctcttatattagtttacagagggagta 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagaggg 72
|||||| |||||||||||| |||||||||||
Sbjct: 39 tctaaatgctcttatattagtttacagaggg 9
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 ttctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||||| ||||| |||||||||
Sbjct: 54 ttctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtat 77
|||||||| ||||||||| |||||||||||||||||
Sbjct: 39 tctaaacgatcttatatttctttacagagggagtat 4
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagtat 77
|||||||||||||||||| |||||||||||| ||||
Sbjct: 55 tctaaacgctcttatatttctttacagagggtgtat 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||| ||||||||||| ||||
Sbjct: 39 tctaaacgctcttatatttctttacagaggtagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 45 aaacgctcttatattactttacagagggagta 76
|||||||||||||||| |||||||||||||||
Sbjct: 36 aaacgctcttatattaatttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagg 71
||||||||||||||||||| ||||| ||||
Sbjct: 55 tctaaacgctcttatattagtttacggagg 84
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 ttctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||||| ||||| |||||||||
Sbjct: 52 ttctaaacgctcttatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| || |||||||| |||||||||||||||
Sbjct: 39 tctaaacacttttatattagtttacagagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtat 77
||||||||||||||||||| ||||| ||||||||||
Sbjct: 39 tctaaacgctcttatattaatttacggagggagtat 4
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||||||||||||| || |||||||| ||||||
Sbjct: 55 tctaaacgctcttatagtagtttacagacggagta 89
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||||||||||||| |||||| ||||||||
Sbjct: 58 tctaaacgctcttatattattttacatagggagta 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtattt 79
|||||||||||| ||||| || |||||||||||||||
Sbjct: 39 tctaaacgctctcatatttattcacagagggagtattt 2
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 43 ctaaacgctcttatattactttacagagggagtat 77
||||||||||||||||| |||||| ||||||||||
Sbjct: 38 ctaaacgctcttatatttctttacggagggagtat 4
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||||| |||||||||| |||||||||||||||
Sbjct: 55 tctaaacgttcttatattagtttacagagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 41 ttctaaacgctcttatattactttacagagggagta 76
||||||||||| |||||||| ||||| |||||||||
Sbjct: 40 ttctaaacgcttttatattagtttacggagggagta 5
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| ||||||||||| |||||||||||||||
Sbjct: 39 tctaaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| |||||||||||| |||||||||||||||
Sbjct: 39 tctaaatgctcttatattagtttacagagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||||||||||||| ||||| |||||||||
Sbjct: 55 tctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| ||||||||||| |||||||||||||||
Sbjct: 39 tctaaacactcttatattagtttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 41 ttctaaacgctcttatattactttacagagggagta 76
||||||||||| |||||||| ||||| |||||||||
Sbjct: 52 ttctaaacgctattatattagtttacggagggagta 87
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||| |||||| |||||||||
Sbjct: 39 tctaaacgctcttatatttctttaccgagggagta 5
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| ||||||||||| ||||| ||||||||||
Sbjct: 55 tctaaatgctcttatatttctttatagagggagta 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| |||||||||||| |||||||||||||||
Sbjct: 39 tctaaaagctcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||||||||||||| |||| |||||||||
Sbjct: 62 tctaaacgctcttatattagtttaaggagggagta 96
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| |||||||||||| |||||||||||||||
Sbjct: 54 tctaaatgctcttatattagtttacagagggagta 88
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| |||||||||| ||||||||||||||||
Sbjct: 53 tctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagt 75
||||||||||||||||||| ||||| ||||||||
Sbjct: 55 tctaaacgctcttatattagtttactgagggagt 88
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 43 ctaaacgctcttatattactttacagagggagta 76
|||||||||||||||||| ||||| |||||||||
Sbjct: 38 ctaaacgctcttatattagtttacggagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagtatt 78
|||||| |||||||||||| |||||||||| ||||||
Sbjct: 55 tctaaatgctcttatattagtttacagaggaagtatt 91
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 44 taaacgctcttatattactttacagagggagtat 77
|||||| ||||||||| |||||||||||||||||
Sbjct: 37 taaacgatcttatatttctttacagagggagtat 4
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 49 gctcttatattactttacagagggagtatt 78
|||||||||||| |||||||||||||||||
Sbjct: 32 gctcttatattagtttacagagggagtatt 3
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 acgctcttatattactttacagagggagta 76
|||||||||||||| ||||| |||||||||
Sbjct: 33 acgctcttatattagtttacggagggagta 62
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 41 ttctaaacgctcttatattactttacagaggga 73
|||||||||||||||||||| ||||| ||||||
Sbjct: 40 ttctaaacgctcttatattagtttacggaggga 8
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 49 gctcttatattactttacagagggagtat 77
|||||||||||| ||||||||||||||||
Sbjct: 32 gctcttatattagtttacagagggagtat 4
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| ||||||||||| |||||| |||||||||
Sbjct: 55 tctaaatgctcttatatttctttacggagggagta 89
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagtatt 78
|||||| ||| |||||||| |||||||||||||||||
Sbjct: 39 tctaaatgcttttatattagtttacagagggagtatt 3
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 aaacgctcttatattactttacagagggagta 76
|||| ||||||||||| |||||||||||||||
Sbjct: 36 aaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagaggga 73
|||||||||||||||||| |||||| ||||||
Sbjct: 55 tctaaacgctcttatatttctttactgaggga 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||||| |||||||| |||||||||||||||
Sbjct: 39 tctaaacgcccttatatttgtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| ||||||||||| ||||| |||||||||
Sbjct: 39 tctaaacactcttatattagtttacggagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
||||||| ||||||||||| ||||| |||||||||
Sbjct: 39 tctaaacactcttatattagtttacggagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| | |||||||||| |||||||||||||||
Sbjct: 55 tctaaaaggtcttatattagtttacagagggagta 89
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| | |||||||||| |||||||||||||||
Sbjct: 57 tctaaaaggtcttatattagtttacagagggagta 91
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 50 ctcttatattactttacagagggagta 76
||||||||||| |||||||||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||| ||||||||||||| ||||||||| ||||||
Sbjct: 39 tctagacgctcttatatttctttacagaaggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| |||||||||||| ||||| |||||||||
Sbjct: 53 tctaaatgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagta 76
|||||| | ||||||||| ||||||||||||||||
Sbjct: 55 tctaaatgatcttatatttctttacagagggagta 89
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 tctaaacgctcttatattactttacagagggagt 75
||||||| ||||||||||| ||||| ||||||||
Sbjct: 55 tctaaactctcttatattagtttacggagggagt 88
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 41 ttctaaacgctcttatattactttacagagggagtatt 78
||||||| |||||||||||| |||| |||||||||||
Sbjct: 54 ttctaaatgctcttatattagtttatggagggagtatt 91
