miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 24 tccctgtgtaaacaaatgtaagatgttttaggttagtactttagtgatctaaaacgtctt 83
||||| ||||||| ||| ||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 86 tccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctt 27
Query: 84 atatttatttacagaggga 102
||||| ||||||||||||
Sbjct: 26 atattagtttacagaggga 8
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagta 105
||||||||||||| |||||||||| |||||||||||||||
Sbjct: 49 tagtgatctaaaaggtcttatattagtttacagagggagta 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
|||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 50 tactttagtgatctaaaagctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagta 105
||||||||||||| |||||||||| |||||||||||||||
Sbjct: 51 tagtgatctaaaaggtcttatattagtttacagagggagta 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 64 ttagtgatctaaaacgtcttatatttatttacagaggga 102
|||||||||||||| |||||||||| ||||||||||||
Sbjct: 46 ttagtgatctaaaaggtcttatattagtttacagaggga 8
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 63 tttagtgatctaaaacgtcttatatttatttacagagggagtat 106
|||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 47 tttagtgatctaaacgatcttatatttctttacagagggagtat 4
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagtatt 107
||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 50 tactttagtgatctaaacgctcttatattagtttacagagggagtatt 3
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 44 tactttagtgatctaaatgctcttatatttctttacggagggagta 89
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 24 tccctgtgtaaacaaatgtaagatgttttaggttagtactttagtgatctaaaacgtctt 83
||||| |||||| |||| |||||| ||||| | | ||||||||||||||||| ||||
Sbjct: 86 tccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacattctt 27
Query: 84 atatttatttacagagggagta 105
|||||| | ||| |||||||||
Sbjct: 26 atatttctgtacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tcttatatttatttacagagggagta 105
|||||||||| |||||||||||||||
Sbjct: 64 tcttatatttctttacagagggagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagta 105
|||||||||||| |||||||||| |||||||||||||||
Sbjct: 43 tagtgatctaaacgctcttatatttctttacagagggagta 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 tcttatatttatttacagagggagtat 106
|||||||||| ||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagtat 4
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagta 105
|||||||||||| |||||||||| |||||||||||||||
Sbjct: 47 tagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 50 tttaggttagtactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||| ||| ||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 34 tttagattactactttagtgatctaaatgtttttatattagtttacagagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 50 tttaggttagtactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||| ||| || |||||||||||||| ||||||||| |||||||||||||||
Sbjct: 60 tttagattactattttagtgatctaaatgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagtatt 107
|||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 45 tagtgatctaaacgctctcatatttattcacagagggagtatt 3
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 tcttatatttatttacagagggagtat 106
|||||||||| ||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggag 103
|||||||||||| |||||||||| |||||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 63 tttagtgatctaaaacgtcttatatttatttacagagggagta 105
|||||||||| ||| ||||||||| ||||||||||||||||
Sbjct: 47 tttagtgatccaaacgctcttatattaatttacagagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
|||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 44 tactttagtgatctaagcgctcttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct: 50 tactttagtaatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 80 tcttatatttatttacagagggagtattag 109
||||||||| |||||||||||||||||||
Sbjct: 30 tcttatattagtttacagagggagtattag 1
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||| ||||||||||| |||||||||| |||||||||| ||||
Sbjct: 50 tacttcagtgatctaaacgctcttatatttctttacagaggtagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 65 tagtgatctaaaacgtcttatatttatttacagagggagtat 106
|||||||||||| |||||||||| ||||||||||| ||||
Sbjct: 49 tagtgatctaaacgctcttatatttctttacagagggtgtat 90
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 60 tactttagtgatctaaaacgtcttatatttatttacagagggagta 105
||||||||||||||| | |||||||||| |||||||| ||||||
Sbjct: 50 tactttagtgatctagacgctcttatatttctttacagaaggagta 5
