miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score =  176 bits (89), Expect = 4e-44
 Identities = 101/105 (96%)
 Strand = Plus / Minus

                                                                       
Query: 8   gttatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagt 67
           |||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||
Sbjct: 105 gttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagt 46

                                                        
Query: 68  tgtactaagcttaagacacttattttaggaccgagggaatatata 112
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  tgtactaagcttaagacacttattttaggaccgagggaatatata 1



 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 40 caactttgtactagagctaatacaaagttg 69
          ||||||||||||||||||||||||||||||
Sbjct: 44 caactttgtactagagctaatacaaagttg 73




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  117 bits (59), Expect = 3e-26
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           |||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttat 43

                                              
Query: 71  actaagcttaagacacttattttaggaccgaggga 105
           ||||||||||||||| ||||||| |||| ||||||
Sbjct: 42  actaagcttaagacagttattttgggacggaggga 8



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 tactccctccgtctcaaaataactgtct 39
          ||||||||||||| ||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtct 32




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  109 bits (55), Expect = 8e-24
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| ||||||||||||||||||||||||||||  ||| |||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42

                                                  
Query: 72  ctaagcttaagacacttattttaggaccgagggaatata 110
           ||| ||| |||||||||||||| | || |||||| ||||
Sbjct: 41  ctacgctcaagacacttattttggaacggagggagtata 3



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 tttgtactagagctaatacaaagttg 69
          ||||||||||||||| ||||||||||
Sbjct: 48 tttgtactagagctagtacaaagttg 73




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score =  109 bits (55), Expect = 8e-24
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           |||||||||||||| ||||||||||||||||||||| ||||||| ||| || ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttat 43

                                              
Query: 71  actaagcttaagacacttattttaggaccgaggga 105
           ||||||||||||||| ||||||| |||| ||||||
Sbjct: 42  actaagcttaagacagttattttgggacggaggga 8



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 tactccctccgtctcaaaataactgtct 39
          ||||||||||||| ||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtct 32




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score =  107 bits (54), Expect = 3e-23
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||| |||||||||||||||||||||| |||||||||  ||| |||||| |||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42

                                 
Query: 72  ctaagcttaagacacttatttt 93
           ||||| ||||||||||||||||
Sbjct: 41  ctaagattaagacacttatttt 20



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 tactccctccgtctcaaaataactgtct 39
          |||||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtctcaaaataagtgtct 32




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score =  101 bits (51), Expect = 2e-21
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| |||||||| ||||||||||||||| ||    || ||||||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42

                                                  
Query: 72  ctaagcttaagacacttattttaggaccgagggaatata 110
           |||||||| ||||||||||||| |||| |||||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagggagtata 3



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 9  ttatactccctccgtctcaaaataactgtctcaa 42
          |||||||||||||||| |||||||| ||||||||
Sbjct: 2  ttatactccctccgtcccaaaataagtgtctcaa 35



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 40 caactttgtactagagctaatacaaagttg 69
          ||||||||||||| || |||||||||||||
Sbjct: 44 caactttgtactaaagttaatacaaagttg 73




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||| |||||||| |||||||||||||||||||||||| ||||  || |||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42

                                 
Query: 72  ctaagcttaagacacttatttt 93
            |||||||||||||||||||||
Sbjct: 41  ttaagcttaagacacttatttt 20




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 10  tatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttg 69
           ||||||||||||||| |||||||| |||||||||||||||||||   || |||||| || 
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaatta 44

                                               
Query: 70  tactaagcttaagacacttattttaggaccgaggga 105
            ||||||||| ||||||||||||| |||| ||||||
Sbjct: 43  cactaagcttgagacacttattttgggacggaggga 8



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
          ||||||||||||| |||||||| ||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 93.7 bits (47), Expect = 5e-19
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| |||||||| ||||||||||||||| ||    || ||||| ||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42

                                                  
Query: 72  ctaagcttaagacacttattttaggaccgagggaatata 110
           |||||||| ||||||||||||| |||| |||||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagggagtata 3



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 9  ttatactccctccgtctcaaaataactgtctcaa 42
          |||||||||||||||| |||||||| ||||||||
Sbjct: 2  ttatactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||| || |||||||| ||||||||||||||||||   ||| |||||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42

                                             
Query: 72  ctaagcttaagacacttattttaggaccgaggga 105
           ||||||| |||||||||||||| |||| ||||||
Sbjct: 41  ctaagctcaagacacttattttgggacggaggga 8




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||||| ||||||||| |||||||||||||||||||  ||| ||||||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgta 42

                 
Query: 72  ctaagc 77
           ||||||
Sbjct: 41  ctaagc 36



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 40 caactttgtactagagctaatacaaagttg 69
          ||||||||||||||||||| ||||||||||
Sbjct: 44 caactttgtactagagctagtacaaagttg 73




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| ||||||| |||||| |||||||||||||  |   || ||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42

                                            
Query: 72  ctaagcttaagacacttattttaggaccgaggg 104
           |||||||||||||||||||||| |||| |||||
Sbjct: 41  ctaagcttaagacacttattttgggacggaggg 9




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                      
Query: 9  ttatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagtt 68
          |||||||||||||||  |||||||| |||||||| ||||||||||  ||| |||||||||
Sbjct: 2  ttatactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagtt 61

                                   
Query: 69 gtactaagcttaagacacttatttt 93
          ||||||||||| ||| | |||||||
Sbjct: 62 gtactaagcttgagatagttatttt 86



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 40 caactttgtactagagctaatacaaa 65
          ||||||||||||||||||| ||||||
Sbjct: 62 caactttgtactagagctagtacaaa 37




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                      
Query: 14 ctccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgtact 73
          ||||||||||| |||||||| |||||||||||||||||||   |||||||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtact 66

                              
Query: 74 aagcttaagacacttatttt 93
          |   || |||||||||||||
Sbjct: 67 agagttgagacacttatttt 86




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                      
Query: 26 caaaataactgtctcaactttgtactagagctaatacaaagttgtactaagcttaagaca 85
          |||||||| |||||||||||||||||||  ||| |||||||||||||||||||| |||||
Sbjct: 87 caaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagaca 28

                  
Query: 86 cttatttt 93
           |||||||
Sbjct: 27 gttatttt 20



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 10 tatactccctccgtctcaaaataactgtctcaa 42
          |||||||||||| ||||||||||||||||||||
Sbjct: 3  tatactccctccatctcaaaataactgtctcaa 35




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 104

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 77/87 (88%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||| || |||||||| |||||||||||||||||||  ||| ||||||||||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgta 42

                                      
Query: 72  ctaagcttaagacacttattttaggac 98
           ||| |||| ||||| ||||||| ||||
Sbjct: 41  ctaggcttgagacagttattttgggac 15



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 11 atactccctccgtctcaaaataactgtctcaa 42
          |||||| ||||||| |||||||||||||||||
Sbjct: 4  atactcactccgtcccaaaataactgtctcaa 35



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 40 caactttgtactagagctaatacaaagttg 69
          ||||||||||||||| ||| ||||||||||
Sbjct: 44 caactttgtactagaactagtacaaagttg 73




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| |||||||| ||||| |||||||| ||||  ||| || ||| || ||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42

                                  
Query: 72  ctaagcttaagacacttatttta 94
           |||||||||||||||||||||||
Sbjct: 41  ctaagcttaagacacttatttta 19




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 73/82 (89%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||| || ||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41

                                 
Query: 72  ctaagcttaagacacttatttt 93
           | ||| || ||||| |||||||
Sbjct: 40  caaag-ttgagacagttatttt 20



 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtac 50
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  atactccctccgtctcaaaataactgtctcaactttgtac 43




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           ||||||||||||| |||||||| ||||| ||||||||||||    || ||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42

                                 
Query: 72  ctaagcttaagacacttatttt 93
           ||| |||| |||||||||||||
Sbjct: 41  ctaggcttgagacacttatttt 20



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
          |||||||||||||||||||||| ||||||||
Sbjct: 5  tactccctccgtctcaaaataagtgtctcaa 35




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 86/100 (86%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           |||||||||||||| |||||||| ||||||| ||||||||||   ||| || ||| ||||
Sbjct: 101 atactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgt 43

                                                   
Query: 71  actaagcttaagacacttattttaggaccgagggaatata 110
           |||||| || ||||||||||||| |||| |||||| ||||
Sbjct: 42  actaaggttgagacacttattttgggacggagggagtata 3



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  ttatactccctccgtctcaaaataactgtctcaac 43
          |||||||||||||||| |||||||| |||||||||
Sbjct: 2  ttatactccctccgtcccaaaataagtgtctcaac 36




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9   ttatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagtt 68
           |||||||||||||||| ||||||||||||||||| |||||||||    || |||||||||
Sbjct: 152 ttatactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagtt 93

                   
Query: 69  gtactaag 76
           ||||||||
Sbjct: 92  gtactaag 85



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                      
Query: 36 gtctcaactttgtactagagctaatacaaagttgtactaagcttaagacacttattttag 95
          ||||||||||||||||| |  || | ||||||||||||||| || ||||||||||||| |
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18

             
Query: 96 gac 98
          |||
Sbjct: 17 gac 15




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           ||||||||||| || |||||||| ||||||||||||||||||    || |||||||||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50

                           
Query: 71  actaagcttaagacac 86
           |||||||| |||||||
Sbjct: 49  actaagctcaagacac 34




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||| |||||| |||||||| |||||||| |||  ||||   ||| ||||||||||||
Sbjct: 5   tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64

                                                  
Query: 72  ctaagcttaagacacttattttaggaccgagggaatata 110
           ||||| || ||||||||||||| |||| |||||| ||||
Sbjct: 65  ctaaggttgagacacttattttgggacggagggagtata 103



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 10  tatactccctccgtctcaaaataactgtctcaac 43
           ||||||||||||||| |||||||| |||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaac 70




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||||||||||||||| | ||||||||||  |||||  ||| || |||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgta 42

                                             
Query: 72  ctaagcttaagacacttattttaggaccgaggga 105
           ||||| || ||| | ||||||| |||| ||||||
Sbjct: 41  ctaagtttgagaaagttattttgggacggaggga 8



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
          ||||||||||||| |||||||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataactttctcaa 35




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           ||||||| |||||| |||||||| |||||||||||| ||||||   || |||||| ||||
Sbjct: 4   atactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgt 63

                                              
Query: 71  actaagcttaagacacttattttaggaccgaggga 105
           | |||| || ||||| ||||||| |||| ||||||
Sbjct: 64  attaagtttgagacagttattttgggacggaggga 98



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 12  tactccctccgtctcaaaataactgtctcaa 42
           ||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
           |||||||||||||||||||||| | ||||| ||||  |||||  ||| || |||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgta 42

                                             
Query: 72  ctaagcttaagacacttattttaggaccgaggga 105
           ||||| || ||| | ||||||| |||| ||||||
Sbjct: 41  ctaagtttgagaaagttattttgggacggaggga 8



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
          ||||||||||||| |||||||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataactttctcaa 35




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 9   ttatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagtt 68
           |||||||||||||||| |||||||| || ||||||||||||||| || || | |||||||
Sbjct: 103 ttatactccctccgtcccaaaataagtgactcaactttgtactaaagttagtgcaaagtt 44

            
Query: 69  g 69
           |
Sbjct: 43  g 43




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 119

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                      
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
          |||||||||||||||||||||  ||||||||||||   ||||  ||| || |||||||||
Sbjct: 5  tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgta 64

                                     
Query: 72 ctaagcttaagacacttattttaggac 98
          ||||| || ||| | ||||||| ||||
Sbjct: 65 ctaagtttgagaaagttattttgggac 91



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 12  tactccctccgtctcaaaataactgtc 38
           ||||||||||||| |||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgta 71
          ||||||||| ||  |||||||||||||| |||||||||||||   || || ||| || ||
Sbjct: 5  tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64

                                
Query: 72 ctaagcttaagacacttatttt 93
          ||||| |||||||| |||||||
Sbjct: 65 ctaagtttaagacatttatttt 86




>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
          Length = 106

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 9   ttatactccctccgtctcaaaataactgtctcaacttt 46
           ||||||| ||||||||||||||||||||||| ||||||
Sbjct: 105 ttatacttcctccgtctcaaaataactgtcttaacttt 68



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 10 tatactccctccgtctcaaaataactgt 37
          |||||||||||||| |||||||||||||
Sbjct: 3  tatactccctccgtttcaaaataactgt 30




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtacta 52
          |||||||||||||| |||||||| || |||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgactcaactttgtacta 45




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
           wheat)
          Length = 107

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 9   ttatactccctccgtctcaaaataactgtctcaactttgtacta 52
           |||||||||||||||| | |||||| || |||||||||||||||
Sbjct: 106 ttatactccctccgtcccgaaataagtgactcaactttgtacta 63



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 40/45 (88%), Gaps = 2/45 (4%)
 Strand = Plus / Plus

                                                       
Query: 10 tatactccctccgtctcaaaataactg--tctcaactttgtacta 52
          ||||||||||||||| |||||||| ||  |||||||||| |||||
Sbjct: 3  tatactccctccgtcccaaaataagtggatctcaactttatacta 47




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                      
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttg 69
          ||||||||||| ||| |||||||| || ||||||||||||||| || || || |||||||
Sbjct: 3  tatactccctctgtcccaaaataagtgactcaactttgtactaaagttagtataaagttg 62




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 70/83 (84%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
          ||||||||||||||||||||||| | ||| || ||| ||||||   || | ||||||| |
Sbjct: 4  atactccctccgtctcaaaataagtttcttaattttatactag-cttagtgcaaagttat 62

                                 
Query: 71 actaagcttaagacacttatttt 93
          ||||||||| ||||| |||||||
Sbjct: 63 actaagcttgagacaattatttt 85



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 12  tactccctccgtctcaaaataactgtctcaa 42
           |||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70




>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
           (bread wheat)
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataactgtctcaactttgtactagagctaatacaaagttgt 70
           ||||||||||| || |||||||| ||| | || |||||| |||   || || |||||| |
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43

                                                     
Query: 71  actaagcttaagacacttattttaggaccgagggaatatata 112
           |||||| || ||||||||||||||| || || ||| ||||||
Sbjct: 42  actaagattgagacacttattttagaacggaaggagtatata 1




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                    
Query: 12 tactccctccgtctcaaaataactgtct-caactttgtacta 52
          ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctccaactttgtacta 46




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
          wheat)
          Length = 93

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 14 ctccctccgtctcaaaataactgtctcaacttt 46
          ||||||||||| |||||||| ||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaacttt 39



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtac 50
          |||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 91 tatacttcctccgtcccaaaataagtgtctcaacttagtac 51



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 60  tacaaagttgtactaagcttaagacacttattttaggaccgaggga 105
           ||||||||| ||||||  || ||||||||||||| |||| ||||||
Sbjct: 53  tacaaagttatactaaagttgagacacttattttgggacggaggga 8




>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
          (bread wheat)
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                      
Query: 9  ttatactccctccgtctcaaaataactgtctcaactttgtacta 52
          ||||||| ||||||| ||||||||  || |||||||||||||||
Sbjct: 93 ttatacttcctccgtttcaaaatagatgactcaactttgtacta 50




>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
           (African rice)
          Length = 120

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 10  tatactccctccgtctcaaaataa 33
           ||||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaataa 95




>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
           Indica Group
          Length = 161

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 9   ttatactccctccgtctcaaaata 32
           ||||||||||||||||||||||||
Sbjct: 160 ttatactccctccgtctcaaaata 137




>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
          Indica Group
          Length = 231

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 atactccctccgtctcaaaataa 33
          |||||||||||||||||||||||
Sbjct: 1  atactccctccgtctcaaaataa 23




>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
          Indica Group
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 atactccctccgtctcaaaataa 33
          |||||||||||||||||||||||
Sbjct: 4  atactccctccgtctcaaaataa 26




>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
           Group
          Length = 130

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 10  tatactccctccgtctcaaaata 32
           |||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaata 106




>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
           (barrel medic)
          Length = 157

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  atactccctccgtctcaaaata 32
           ||||||||||||||||||||||
Sbjct: 154 atactccctccgtctcaaaata 133




>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
          subsp. aegilopoides
          Length = 117

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 12 tactccctccgtctcaaaataactgtctcaactttgta 49
          ||||||||||||| |||| ||| || ||||||||||||
Sbjct: 5  tactccctccgtcccaaattaagtgactcaactttgta 42




>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
          (bread wheat)
          Length = 94

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtacta 52
          |||||||||||||  |||||||  || |||||||||||||||
Sbjct: 4  atactccctccgttccaaaatagatgactcaactttgtacta 45




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 9   ttatactccctccgtctcaaaataactgtctcaa 42
           |||||||||||||||| |||||||| || |||||
Sbjct: 115 ttatactccctccgtcccaaaataagtgactcaa 82




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 9   ttatactccctccgtctcaaaataactgtc 38
           |||||||||||||||| |||||||| ||||
Sbjct: 105 ttatactccctccgtcccaaaataagtgtc 76




>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
          Japonica Group
          Length = 110

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tatactccctccgtctcaaaat 31
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtctcaaaat 24




>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
          Indica Group
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 tactccctccgtctcaaaataa 33
          ||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72