miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00731;mir-155;AADN02010688.1/48715-48779 9031:Gallus gallus
(chicken)
Length = 65
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatta 68
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacctctgaatgactcctacatgttagcatta 61
Query: 69 aca 71
|||
Sbjct: 62 aca 64
>RF00731;mir-155;ABRQ01311671.1/11595-11658 9813:Procavia capensis
(cape rock hyrax)
Length = 64
Score = 91.7 bits (46), Expect = 1e-18
Identities = 56/58 (96%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatta 68
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttgcct-caactgactcctacatgttagcatta 60
>RF00731;mir-155;AAGU02298634.1/113-176 9785:Loxodonta africana
(African savanna elephant)
Length = 64
Score = 89.7 bits (45), Expect = 5e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 8 ctgttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatt 67
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 ctgttaatgctaatcgtgataggggtttttacct-caagcaactcctacatgttagcatt 59
Query: 68 aacag 72
|||||
Sbjct: 60 aacag 64
>RF00731;mir-155;AY096003.1/159-223 10090:Mus musculus (house
mouse)
Length = 65
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 8 ctgttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatt 67
|||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||
Sbjct: 1 ctgttaatgctaattgtgataggggttttggcctctgactgactcctacctgttagcatt 60
Query: 68 aacag 72
|||||
Sbjct: 61 aacag 65
>RF00731;mir-155;AAFR03036553.1/2910-2839 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/71 (87%), Gaps = 7/71 (9%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggttttt-------acctccaactgactcctacatgtt 61
||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttctttttgacttcgaactgactcctacatgtt 61
Query: 62 agcattaacag 72
|||||||||||
Sbjct: 62 agcattaacag 72
>RF00731;mir-155;AANH01000396.1/166544-166481 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggttttt 37
||||||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AAPN01114009.1/559-624 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtttt 36
|||||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtttt 29
>RF00731;mir-155;BAAE01057424.1/197-134 8090:Oryzias latipes
(Japanese medaka)
Length = 64
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggtt 34
||||||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;AAWZ01036341.1/34181-34117 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatt 67
||||||||||||||||| || |||||| ||| |||||||||||||||| |||||
Sbjct: 4 ttaatgctaatcgtgatgggagtttttgtctctggctgactcctacatgttggcatt 60
>RF00731;mir-155;CU571081.7/40496-40433 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;CAAE01014581.1/3640492-3640429 99883:Tetraodon
nigroviridis
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtt 34
|||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;CAAB01005608.1/1273-1335 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtt 34
|||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;AAGW01269088.1/344-408 9986:Oryctolagus cuniculus
(rabbit)
Length = 65
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 gactcctacatgttagcattaacag 72
|||| ||||||||||||||||||||
Sbjct: 41 gacttctacatgttagcattaacag 65
>RF00731;mir-155;AAGW01298260.1/2849-2928 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 gactcctacatgttagcattaacag 72
||||||||||| |||||||||||||
Sbjct: 56 gactcctacatattagcattaacag 80
