miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 176 bits (89), Expect = 4e-44
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 16 accgcagggaaaatgagggacttttgggggcagatgtgtttccattccactatcataatg 75
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 accgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatg 60
Query: 76 cccctaaaaatccttattgctcttgcagtattc 108
|||||||||||||||||||||||||||||||||
Sbjct: 61 cccctaaaaatccttattgctcttgcagtattc 93
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 17 ccgcagggaaaatgagggacttttgggggcagatgtgtttccattccactatcataatgc 76
||||||||| |||||||| |||||||||||| |||||||| || ||| ||||||||||
Sbjct: 2 ccgcagggagaatgaggggcttttgggggcacttgtgtttcagtttcaccatcataatgc 61
Query: 77 ccctaaaaatccttattgctcttgca 102
||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 25 aaaatgagggacttttgggggcagatgtgtttccattccactatcataatgcccctaaaa 84
|||||||||||||||| ||||||| ||||||| | | | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaa 69
Query: 85 atccttattgctcttgca 102
||||||||||||||||||
Sbjct: 70 atccttattgctcttgca 87
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 68 tcataatgcccctaaaaatccttattgctcttgcagt 104
|||||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgcagt 89
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 68 tcataatgcccctaaaaatccttattgctcttgcagtat 106
||||||||||||||||||||||||||| |||||||||||
Sbjct: 52 tcataatgcccctaaaaatccttattgttcttgcagtat 90
>RF00659;mir-365;AAVX01240641.1/1189-1241 7868:Callorhinchus milii
(ghost shark)
Length = 53
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 34 gacttttgggggcagatgtgtttccattccactatcataatgcccctaaaa 84
||||||||||||||| |||||||| | || ||||||||||||||||||
Sbjct: 1 gacttttgggggcaggtgtgtttcagctgcataatcataatgcccctaaaa 51
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 68 tcataatgcccctaaaaatccttattgctcttgca 102
||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tcataatgcccctaaaaatccctatttctcatgca 87
