miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 83.8 bits (42), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
||||||||||||||| ||| |||||||||||||| |||| | ||||||||||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 65.9 bits (33), Expect = 9e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
||||||| ||||||| ||||| ||| || | |||||||||||||||||||||||||||
Sbjct: 1 aatctagcggaaacacttccggacaggcttgggtctggacaccagtgtgcggaagtgctt 60
Query: 75 ctgct 79
|||||
Sbjct: 61 ctgct 65
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 25 aaacatttccgcacaaactagattctggacaccagtgtgc 64
||||||||| |||||||||||||| |||| ||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
||||||||||||||| ||| ||||||||| |||| | || ||||||||| ||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgatt-ttgatgccagtgtgcagaaatgctt 59
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagat 47
||||||||||||||||||| ||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 21 gtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgcttctgctg 80
||||||||||||| ||||| |||| | | || |||||||||| ||||||||||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 81 catt 84
||||
Sbjct: 67 catt 70
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 16 atctagtggaaacatttccgcacaaactaga 46
||||||||||||||| || ||||||||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 22 tggaaacatttccgcacaaactagattctggacaccagtgtgc 64
|||||||||||| ||||||||| |||| |||| |||| |||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgc 50
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 accagtgtgcggaagtgcttctgctgcatt 84
|||||||||| |||||||||||||| ||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
||||||| | ||| ||||| |||||||| ||| | |||| || | |||| |||| |||||
Sbjct: 1 aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60
Query: 75 ctgctgcatt 84
||||||||||
Sbjct: 61 ctgctgcatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 74
|||||||||||| || ||| ||||||||| || | || | |||||||||||| |||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 61 ctgctacatt 70
