miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 16 aatctagtgaaaacatttccgcacaaacaagattctgcacaccagtgtgcggaagtgctt 75
||||||||| ||||| ||| |||||||| ||||| || | || |||||||||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggatac-agtgtgcggaagtgctt 59
Query: 76 ctgctgcatt 85
||||| ||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 49 tctgcacaccagtgtgcggaagtgcttctgct 80
|||| |||||||||||||||||||||||||||
Sbjct: 34 tctggacaccagtgtgcggaagtgcttctgct 65
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 16 aatctagtgaaaacatttccgcacaaacaagattctgcacaccagtgtgcggaagtgctt 75
||||||||| ||||||||||||||| || |||| || ||||||||||||||||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 76 ctgctgcatt 85
||||| ||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 56 accagtgtgcggaagtgcttctgctgcatt 85
|||||||||| |||||||||||||| ||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 56 accagtgtgcggaagtgcttctgctgcatt 85
|||||||||| |||||||||||||| ||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 16 aatctagtgaaaacatttccgcacaaacaagattctgcacaccagtgtgcggaagtgctt 75
||||||| ||||| ||||| |||||||| ||| | || | || | |||| |||| |||||
Sbjct: 1 aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60
Query: 76 ctgctgcatt 85
||||||||||
Sbjct: 61 ctgctgcatt 70
