miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score =  212 bits (107), Expect = 1e-54
 Identities = 113/115 (98%)
 Strand = Plus / Plus

                                                                       
Query: 37  agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacat 96
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5   agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtactt 64

                                                                  
Query: 97  gttttggctctacccatgcactgcctcttccctggcttgtggctcttctttttct 151
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65  gttttggctctacccatgcactgcctcttccctggcttgtggctcttccttttct 119




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score =  111 bits (56), Expect = 3e-24
 Identities = 105/119 (88%), Gaps = 3/119 (2%)
 Strand = Plus / Plus

                                                                       
Query: 33  agaaagagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagt 92
           ||||| |||||||  ||||| |||||||||||| |||||||||| |||||||||||||  
Sbjct: 1   agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaa-a 59

                                                                      
Query: 93  aca--tgttttggctctacccatgcactgcctcttccctggcttgtggctcttcttttt 149
           |||  |||||||||||||||| ||||||||||||||||||||||  || ||||||||||
Sbjct: 60  acatctgttttggctctacccctgcactgcctcttccctggcttccggttcttcttttt 118




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 96  tgttttggctctacccatgcactgcctcttccctggct 133
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 71  tgtttttgctctacccatgcactgcctcttccctggct 108




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 98  ttttggctctacccatgcactgcctcttccctggct 133
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 73  ttttgtctctacccatgcactgcctcttccctggct 108




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 96  tgttttggctctacccatgcactgcctcttccctggc 132
           |||| ||||||||| ||||||||||||||||||||||
Sbjct: 82  tgttgtggctctactcatgcactgcctcttccctggc 118



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 54 gggaacaggcagagcatggatggagcta 81
          ||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 98  ttttggctctacccatgcactgcctcttccctggct 133
           |||||| ||||||| |||||||||||||||||||||
Sbjct: 71  ttttggttctacccctgcactgcctcttccctggct 106




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 96  tgttttggctctacccatgcactgcctcttccctggctt 134
           |||| |||||| || ||||||||||||||||||||||||
Sbjct: 68  tgttgtggctccactcatgcactgcctcttccctggctt 106




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 111 catgcactgcctcttccctggct 133
           |||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139