miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
           deltoides
          Length = 120

 Score =  238 bits (120), Expect = 2e-62
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  tggagaaacatcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggagaaacatcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgt 60

                                                                       
Query: 73  taccaaccctttatggggcatggcatcatttcaccagcgctgcattcaatcatgtttttc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccaaccctttatggggcatggcatcatttcaccagcgctgcattcaatcatgtttttc 120




>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
          (papaya)
          Length = 96

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 13 tggagaaacatcattgagtgcagcgttgatga 44
          ||||||||||||||||||||||||||||||||
Sbjct: 1  tggagaaacatcattgagtgcagcgttgatga 32




>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
          Length = 114

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 97  atcatttcaccagcgctgcattcaatcatgtttttc 132
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 79  atcatttcaccagcgctgcattcaaccatgtttttc 114



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 cattgagtgcagcgttgatgaaat 47
          ||||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaat 35




>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
          Length = 122

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 aaacatcattgagtgcagcgttgatgaaa 46
          |||||||||||||||||||||||||||||
Sbjct: 6  aaacatcattgagtgcagcgttgatgaaa 34




>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 13 tggagaaacatcattgagtgcagcgttgatgaaatcct 50
          |||| |||||| ||||||||||||||||||||| ||||
Sbjct: 1  tggataaacattattgagtgcagcgttgatgaagtcct 38




>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
          pekinensis
          Length = 104

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 aacatcattgagtgcagcgttgatg 43
          |||||||||||||||||||||||||
Sbjct: 7  aacatcattgagtgcagcgttgatg 31




>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
          (thale cress)
          Length = 105

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 aacatcattgagtgcagcgttgatg 43
          |||||||||||||||||||||||||
Sbjct: 7  aacatcattgagtgcagcgttgatg 31




>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
          Group
          Length = 112

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 catcattgagtgcagcgttgatgaa 45
          |||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatgaa 33




>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 catcattgagtgcagcgttgatga 44
          ||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatga 32