miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF306827.1/682-774 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 17 ccctctgtaccaaaatataagatgtctttgcagttcaattt 57
|||||||| || |||||||||| || |||||||||||||||
Sbjct: 85 ccctctgttcctaaatataagacgtttttgcagttcaattt 45
>RF00906;MIR1122;FM242578.1/62810-62698 4565:Triticum aestivum
(bread wheat)
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 tactccctctgtaccaaaatataagatgtctttgcagttcaatt 56
||||||| |||| || |||||||||| || ||||||||||||||
Sbjct: 109 tactccccctgtccctaaatataagacgtttttgcagttcaatt 66
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ctactccctctgtaccaaaatataaga 38
||||||||||||| |||||||||||||
Sbjct: 4 ctactccctctgtcccaaaatataaga 30
>RF00906;MIR1122;AY196347.1/5474-5564 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 11 gctactccctctgtaccaaaatataagatgtctttgca 48
||||||||||| || ||| |||||||||||| ||||||
Sbjct: 89 gctactccctccgtcccacaatataagatgtttttgca 52
>RF00906;MIR1122;AAAA02017212.1/23354-23464 39946:Oryza sativa
Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ctactccctctgtaccaaaatataag 37
|||||||||| |||||||||||||||
Sbjct: 108 ctactccctccgtaccaaaatataag 83
>RF00906;MIR1122;AACV01018415.1/900-764 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ctactccctctgtaccaaaatataagatgt 41
||||||||||||| || |||||||||||||
Sbjct: 4 ctactccctctgtccctaaatataagatgt 33
>RF00906;MIR1122;AAAA02027128.1/44166-44066 39946:Oryza sativa
Indica Group
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctctgtaccaaaatataaga 38
|||||||||||| |||||||||||||
Sbjct: 97 tactccctctgtcccaaaatataaga 72
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtaccaaaatataaga 38
|||||||||||||||| |||||||||
Sbjct: 5 tactccctctgtaccataatataaga 30
>RF00906;MIR1122;AP005313.3/33733-33833 39947:Oryza sativa
Japonica Group
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctctgtaccaaaatataaga 38
|||||||||||| |||||||||||||
Sbjct: 97 tactccctctgtcccaaaatataaga 72
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtaccaaaatataaga 38
|||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtcccaaaatataaga 30
>RF00906;MIR1122;AP008214.1/27846174-27846285 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ctactccctctgtaccaaaatataag 37
||||||||||||| ||||||||||||
Sbjct: 4 ctactccctctgtcccaaaatataag 29
>RF00906;MIR1122;AACV01002422.1/2768-2895 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtaccaaaatataaga 38
|||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtcccaaaatataaga 30
