miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

selected mature miRNA sequence: AAAAGTAATCGCGGTTTTTGTC

selected species: Homo sapiens

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM494809_Normal_1	AAAAGTAATCGCGGTTTTTGTC	TAAAAACTGGAATTACTTTTGC	up	2	0

Secondary structure

ATCTGTCCATTAGGTGGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTTAATGGTAAAAACTGGAATTACTTTTGCACTGACCTAATATTAAGC
--------------------CAAAAGTAATCGCGGTTTTTGT 	8
--------------------CAAAAGTAATCGCGGTTTTTG 	1
---------------------AAAAGTAATCGCGGTTTTTGTCA 	19
---------------------AAAAGTAATCGCGGTTTTTGTC 	128
---------------------AAAAGTAATCGCGGTTTTTGT 	46
---------------------AAAAGTAATCGCGGTTTTTG 	6
----------------------AAAGTAATCGCGGTTTTTGTCA 	1
----------------------AAAGTAATCGCGGTTTTTGTC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM494809_Normal_1	AAAAGTAATCGCGGTTTTTGTC	CAAACACCACAATTACTTTTGC	up	4	0

Secondary structure

CAATGTGTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTCAATGGCAAACACCACAATTACTTTTGCACCAACCTAATATAAACC
--------------------CAAAAGTAATCGCGGTTTTTGT 	8
--------------------CAAAAGTAATCGCGGTTTTTG 	1
---------------------AAAAGTAATCGCGGTTTTTGTCA 	19
---------------------AAAAGTAATCGCGGTTTTTGTC 	128
---------------------AAAAGTAATCGCGGTTTTTGT 	46
---------------------AAAAGTAATCGCGGTTTTTG 	6
----------------------AAAGTAATCGCGGTTTTTGTCA 	1
----------------------AAAGTAATCGCGGTTTTTGTC 	1

Overlaps with: MNEST028832
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM494809_Normal_1	AAAAGTAATCGCGGTTTTTGTC	CAAAAACTGCAATTACTTTTGC	up	2	0

Secondary structure

CACAGAGAACAAATCTGATTCTGCATGTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTGAAAGTAATAGCAAAAACTGCAATTACTTTTGCACCAACCTAAAAGTAGTCACTGTCTTCAGATATTTAAA
----------------------------------------CAAAAGTAATCGCGGTTTTTGT 	8
----------------------------------------CAAAAGTAATCGCGGTTTTTG 	1
-----------------------------------------AAAAGTAATCGCGGTTTTTGTCA 	19
-----------------------------------------AAAAGTAATCGCGGTTTTTGTC 	128
-----------------------------------------AAAAGTAATCGCGGTTTTTGT 	46
-----------------------------------------AAAAGTAATCGCGGTTTTTG 	6
------------------------------------------AAAGTAATCGCGGTTTTTGTCA 	1
------------------------------------------AAAGTAATCGCGGTTTTTGTC 	1
----------------------------------------------------------------------------GCAAAAACTGCAATTACTTTTG 	6
-----------------------------------------------------------------------------CAAAAACTGCAATTACTTTTG 	5
-----------------------------------------------------------------------------CAAAAACTGCAATTACTTTTGC 	2
------------------------------------------------------------------------------AAAAACTGCAATTACTTTTG 	1

Overlaps with: MNEST028833
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM494809_Normal_1	AAAAGTAATCGCGGTTTTTGTC	CAAAAACCGCAATTACTTTTGC	up	1	0

Secondary structure

TGTTCCATTTCCAAAGCTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTAATTACTTTACGTTTCATTAATGACAAAAACCGCAATTACTTTTGCACCAACCTAATACTTGCTATCATCACTT
------------------------------CAAAAGTAATCGCGGTTTTTGT 	8
------------------------------CAAAAGTAATCGCGGTTTTTG 	1
-------------------------------AAAAGTAATCGCGGTTTTTGTCA 	19
-------------------------------AAAAGTAATCGCGGTTTTTGTC 	128
-------------------------------AAAAGTAATCGCGGTTTTTGT 	46
-------------------------------AAAAGTAATCGCGGTTTTTG 	6
--------------------------------AAAGTAATCGCGGTTTTTGTCA 	1
--------------------------------AAAGTAATCGCGGTTTTTGTC 	1

Overlaps with: MNEST028834
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-4
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM494811_K562	AAAAGTAATCGCGGTTTTTGTC	TAAAAACTGGAATTACTTTTGC	up	2	0

Secondary structure

ATCTGTCCATTAGGTGGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTTAATGGTAAAAACTGGAATTACTTTTGCACTGACCTAATATTAAGC
--------------------CAAAAGTAATCGCGGTTTTTGT 	13
--------------------CAAAAGTAATCGCGGTTTTTGTC 	1
---------------------AAAAGTAATCGCGGTTTTTGTCA 	21
---------------------AAAAGTAATCGCGGTTTTTGTC 	111
---------------------AAAAGTAATCGCGGTTTTTGT 	65
---------------------AAAAGTAATCGCGGTTTTTG 	4
----------------------AAAGTAATCGCGGTTTTTGTCA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM494811_K562	AAAAGTAATCGCGGTTTTTGTC	CAAACACCACAATTACTTTTGC	up	4	0

Secondary structure

CAATGTGTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTCAATGGCAAACACCACAATTACTTTTGCACCAACCTAATATAAACC
--------------------CAAAAGTAATCGCGGTTTTTGT 	13
--------------------CAAAAGTAATCGCGGTTTTTGTC 	1
---------------------AAAAGTAATCGCGGTTTTTGTCA 	21
---------------------AAAAGTAATCGCGGTTTTTGTC 	111
---------------------AAAAGTAATCGCGGTTTTTGT 	65
---------------------AAAAGTAATCGCGGTTTTTG 	4
----------------------AAAGTAATCGCGGTTTTTGTCA 	1
--------------------------------------------------------------ACCACAATTACTTTTGCACCA 	1

Overlaps with: MNEST028832
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM494811_K562	AAAAGTAATCGCGGTTTTTGTC	CAAAAACTGCAATTACTTTTGC	up	2	0

Secondary structure

CACAGAGAACAAATCTGATTCTGCATGTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTGAAAGTAATAGCAAAAACTGCAATTACTTTTGCACCAACCTAAAAGTAGTCACTGTCTTCAGATATTTAAA
----------------------------------------CAAAAGTAATCGCGGTTTTTGT 	13
----------------------------------------CAAAAGTAATCGCGGTTTTTGTC 	1
-----------------------------------------AAAAGTAATCGCGGTTTTTGTCA 	21
-----------------------------------------AAAAGTAATCGCGGTTTTTGTC 	111
-----------------------------------------AAAAGTAATCGCGGTTTTTGT 	65
-----------------------------------------AAAAGTAATCGCGGTTTTTG 	4
------------------------------------------AAAGTAATCGCGGTTTTTGTCA 	1
----------------------------------------------------------------------------GCAAAAACTGCAATTACTTTTG 	2
-----------------------------------------------------------------------------CAAAAACTGCAATTACTTTTGC 	1
-----------------------------------------------------------------------------CAAAAACTGCAATTACTTTTG 	1
-------------------------------------------------------------------------------AAAACTGCAATTACTTTTGC 	1

Overlaps with: MNEST028833
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM494811_K562	AAAAGTAATCGCGGTTTTTGTC	CAAAAACCGCAATTACTTTTGC	up	1	0

Secondary structure

TGTTCCATTTCCAAAGCTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTAATTACTTTACGTTTCATTAATGACAAAAACCGCAATTACTTTTGCACCAACCTAATACTTGCTATCATCACTT
------------------------------CAAAAGTAATCGCGGTTTTTGT 	13
------------------------------CAAAAGTAATCGCGGTTTTTGTC 	1
-------------------------------AAAAGTAATCGCGGTTTTTGTCA 	21
-------------------------------AAAAGTAATCGCGGTTTTTGTC 	111
-------------------------------AAAAGTAATCGCGGTTTTTGT 	65
-------------------------------AAAAGTAATCGCGGTTTTTG 	4
--------------------------------AAAGTAATCGCGGTTTTTGTCA 	1

Overlaps with: MNEST028834
Overlaps with miRBase pre-miRNAs: hsa-mir-548h-4
HuntMi prediction: true miRNA