miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAACAAACATGGTGCACTTCTT

selected species: Homo sapiens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM531974 AAACAAACATGGTGCACTTCTT GAAGTTGCCCATGTTATTTTCG down 2 2


Secondary structure

GCTCATCTCTGGTACCTGAAAAGAAGTTGCCCATGTTATTTTCGCTTTATATGTGACGAAACAAACATGGTGCACTTCTTTTTCGGTATCAAATATCTC
---------------------AGAAGTTGCCCATGTTATTT 	1
----------------------------------------------------------AAACAAACATGGTGCACTTCTT 	13
----------------------------------------------------------AAACAAACATGGTGCACTTCTTT 	7
----------------------------------------------------------AAACAAACATGGTGCACTT 	2
----------------------------------------------------------AAACAAACATGGTGCACTTC 	1
----------------------------------------------------------AAACAAACATGGTGCACTTCT 	1
-----------------------------------------------------------AACAAACATGGTGCACTTCTTT 	5
-----------------------------------------------------------AACAAACATGGTGCACTTCTT 	1

Overlaps with: MNEST030398
Overlaps with miRBase pre-miRNAs: ptr-mir-495 hsa-mir-495 mml-mir-495 ppy-mir-495
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531982 AAACAAACATGGTGCACTTCTT GAAGTTGCCCATGTTATTTTCG down 2 2


Secondary structure

GCTCATCTCTGGTACCTGAAAAGAAGTTGCCCATGTTATTTTCGCTTTATATGTGACGAAACAAACATGGTGCACTTCTTTTTCGGTATCAAATATCTC
-CTCATCTCTGGTACCTGAAAA 	1
--TCATCTCTGGTACCTGAAAA 	2
---CATCTCTGGTACCTGAAAA 	3
---------------------AGAAGTTGCCCATGTTATTT 	1
----------------------GAAGTTGCCCATGTTATTTTC 	2
----------------------GAAGTTGCCCATGTTATTTTCG 	1
--------------------------------------------------------CGAAACAAACATGGTGCACTTCT 	1
----------------------------------------------------------AAACAAACATGGTGCACTTCTTTT 	13
----------------------------------------------------------AAACAAACATGGTGCACTTCTTT 	931
----------------------------------------------------------AAACAAACATGGTGCACTTCTT 	1527
----------------------------------------------------------AAACAAACATGGTGCACTTCT 	198
----------------------------------------------------------AAACAAACATGGTGCACTTC 	19
----------------------------------------------------------AAACAAACATGGTGCACTT 	24
-----------------------------------------------------------AACAAACATGGTGCACTTCTTT 	123
-----------------------------------------------------------AACAAACATGGTGCACTTCTT 	67
-----------------------------------------------------------AACAAACATGGTGCACTTCT 	8
------------------------------------------------------------ACAAACATGGTGCACTTCTTTT 	2
------------------------------------------------------------ACAAACATGGTGCACTTCTTT 	1
--------------------------------------------------------------AAACATGGTGCACTTCTTT 	2

Overlaps with: MNEST030398
Overlaps with miRBase pre-miRNAs: ptr-mir-495 hsa-mir-495 mml-mir-495 ppy-mir-495
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494811_K562 AAACAAACATGGTGCACTTCTT GAAGTTGCCCATGTTATTTTCG down 2 2


Secondary structure

GCTCATCTCTGGTACCTGAAAAGAAGTTGCCCATGTTATTTTCGCTTTATATGTGACGAAACAAACATGGTGCACTTCTTTTTCGGTATCAAATATCTC
----------------------------------------------------------AAACAAACATGGTGCACTTCTT 	6
----------------------------------------------------------AAACAAACATGGTGCACTTCTTT 	4
-----------------------------------------------------------AACAAACATGGTGCACTTCTTT 	1

Overlaps with: MNEST030398
Overlaps with miRBase pre-miRNAs: ptr-mir-495 hsa-mir-495 mml-mir-495 ppy-mir-495
HuntMi prediction: true miRNA