miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAACGAACAAAAAACTGATGG

selected species: Arabidopsis thaliana

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415786-5994	AAACGAACAAAAAACTGATGG	CATCAGTTTCTTGTTCGTTTCA	down	1	1

Secondary structure

TATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAA
------------------------------------------------------------TTCATCAGTTTCTTGTTCGTT 	1
---------------------------------------------------------------------TTCTTGTTCGTTTCAAAAT 	1
----------------------------------------------------------------------------------------------------------------ATAATCTTGAAACGAACAAAA 	1
-------------------------------------------------------------------------------------------------------------------------AAACGAACAAAAAACTGATGG 	25
--------------------------------------------------------------------------------------------------------------------------AACGAACAAAAAACTGATGGA 	14
---------------------------------------------------------------------------------------------------------------------------ACGAACAAAAAACTGATGGAA 	3
---------------------------------------------------------------------------------------------------------------------------ACGAACAAAAAACTGATGGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------AAAAACATGAGGACTTTATAC 	2
------------------------------------------------------------------------------------------------------------------------------------------------AAACATGAGGACTTTATACTTGTA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------ATGAGGACTTTATACTTGTAA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------TGAGGACTTTATACTTGTAAA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM424847-4989	AAACGAACAAAAAACTGATGG	CATCAGTTTCTTGTTCGTTTCA	down	1	1

Secondary structure

TATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAA
---------------------------------------------------------------ATCAGTTTCTTGTTCGTTTCA 	1
-------------------------------------------------------------------------------------------------------------------------AAACGAACAAAAAACTGATGG 	14
----------------------------------------------------------------------------------------------------------------------------------------TGATGGAAAAACATGAGGACT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM424848-4990	AAACGAACAAAAAACTGATGG	CATCAGTTTCTTGTTCGTTTCA	down	1	1

Secondary structure

TATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAA
---------------------------------------------------------------ATCAGTTTCTTGTTCGTTTCA 	1
-------------------------------------------------------------------------------------------------------------------------AAACGAACAAAAAACTGATGG 	27
-------------------------------------------------------------------------------------------------------------------------AAACGAACAAAAAACTGAT 	1
----------------------------------------------------------------------------------------------------------------------------------------------AAAAACATGAGGACTTTATAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------AAACATGAGGACTTTATACT 	1

HuntMi prediction: true miRNA