miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAAGTGCAACTGTGTAAACC

selected species: Ciona intestinalis

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	AAAGTGCAACTGTGTAAACCT	GTTTACATTGCATGCACTTATC	up	4	1

Secondary structure

TTGTTTCAAACTGCAGTGGGTAAAGTGCAACTGTGTAAACCTGATTATACTGCAGGTTTACATTGCATGCACTTATCCTAATGCTAGTTACAATC
-TGTTTCAAACTGCAGTGGGT 	1
--GTTTCAAACTGCAGTGGGT 	1
--------------------TAAAGTGCAACTGTGTAAACC 	2
---------------------AAAGTGCAACTGTGTAAACCTG 	921
---------------------AAAGTGCAACTGTGTAAACCT 	5291
---------------------AAAGTGCAACTGTGTAAACC 	198
---------------------AAAGTGCAACTGTGTAAAC 	538
----------------------AAGTGCAACTGTGTAAACCT 	4
-------------------------------------------------------GTTTACATTGCATGCACTTATCC 	1
-------------------------------------------------------GTTTACATTGCATGCACTTATC 	2
-------------------------------------------------------GTTTACATTGCATGCACTTAT 	4
-------------------------------------------------------GTTTACATTGCATGCACTT 	3
--------------------------------------------------------TTTACATTGCATGCACTTATCCT 	1
--------------------------------------------------------TTTACATTGCATGCACTTAT 	1

Overlaps with: MNEST025019 MNEST025020
Overlaps with miRBase pre-miRNAs: cin-mir-4029
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343282-14442	AAAGTGCAACTGTGTAAACCT	GTTTACATTGCATGCACTTATC	up	4	1

Secondary structure

TTGTTTCAAACTGCAGTGGGTAAAGTGCAACTGTGTAAACCTGATTATACTGCAGGTTTACATTGCATGCACTTATCCTAATGCTAGTTACAATC
-TGTTTCAAACTGCAGTGGG 	1
--GTTTCAAACTGCAGTGGGT 	1
--------------------TAAAGTGCAACTGTGTAAACC 	3
--------------------TAAAGTGCAACTGTGTAAAC 	1
---------------------AAAGTGCAACTGTGTAAACCTG 	884
---------------------AAAGTGCAACTGTGTAAACCT 	9677
---------------------AAAGTGCAACTGTGTAAACC 	324
---------------------AAAGTGCAACTGTGTAAAC 	911
----------------------AAGTGCAACTGTGTAAACCTG 	2
----------------------AAGTGCAACTGTGTAAACCT 	1
--------------------------------------------------------TTTACATTGCATGCACTTATCC 	1

Overlaps with: MNEST025019 MNEST025020
Overlaps with miRBase pre-miRNAs: cin-mir-4029
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	AAAGTGCAACTGTGTAAACC	TTTACATTGCATGCACTTATC	up	4	1

Secondary structure

TTGTTTCAAACTGCAGTGGGTAAAGTGCAACTGTGTAAACCTGATTATACTGCAGGTTTACATTGCATGCACTTATCCTAATGCTAGTTACAATC
-TGTTTCAAACTGCAGTGGGT 	6
--------------------TAAAGTGCAACTGTGTAAAC 	3
---------------------AAAGTGCAACTGTGTAAACCT 	17
---------------------AAAGTGCAACTGTGTAAACC 	7959
---------------------AAAGTGCAACTGTGTAAAC 	119
----------------------AAGTGCAACTGTGTAAACCT 	3
-------------------------------------------------------GTTTACATTGCATGCACTTA 	3

Overlaps with: MNEST025019 MNEST025020
Overlaps with miRBase pre-miRNAs: cin-mir-4029
HuntMi prediction: true miRNA