miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAAGTGCAACTTTGATAGTG

selected species: Ciona intestinalis

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343282-14442	AAAGTGCAACTTTGATAGTGT	GCTATCAGATGTGCTCTTACA	up	4	0

Secondary structure

ACAAACTGAAGCAGTTGGTGCAAAGTGCAACTTTGATAGTGTGTAACTCTCCACGCTATCAGATGTGCTCTTACACGCTCGCTGCTTACTTTC
--------------------CAAAGTGCAACTTTGATAGTGT 	10
--------------------CAAAGTGCAACTTTGATAGTG 	6
---------------------AAAGTGCAACTTTGATAGTGTG 	2879
---------------------AAAGTGCAACTTTGATAGTGT 	4690
---------------------AAAGTGCAACTTTGATAGTG 	260
---------------------AAAGTGCAACTTTGATAGT 	14
----------------------AAGTGCAACTTTGATAGTGTG 	4

Overlaps with: MNEST025021 MNEST025022
Overlaps with miRBase pre-miRNAs: cin-mir-4030
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343284-14444	AAAGTGCAACTTTGATAGTGTG	CGCTATCAGATGTGCTCTTACA	up	4	0

Secondary structure

ACAAACTGAAGCAGTTGGTGCAAAGTGCAACTTTGATAGTGTGTAACTCTCCACGCTATCAGATGTGCTCTTACACGCTCGCTGCTTACTTTC
--------------------CAAAGTGCAACTTTGATAGTGTG 	1
--------------------CAAAGTGCAACTTTGATAGTGT 	18
---------------------AAAGTGCAACTTTGATAGTGTGT 	276
---------------------AAAGTGCAACTTTGATAGTGTG 	1999
---------------------AAAGTGCAACTTTGATAGTGT 	576
---------------------AAAGTGCAACTTTGATAGTG 	138
---------------------AAAGTGCAACTTTGATAGT 	10
----------------------AAGTGCAACTTTGATAGTGTGT 	1
----------------------AAGTGCAACTTTGATAGTGTG 	2
-----------------------AGTGCAACTTTGATAGTGTG 	1
-----------------------------------------------------CGCTATCAGATGTGCTCTTACAC 	4
-----------------------------------------------------CGCTATCAGATGTGCTCTTACA 	4
-----------------------------------------------------CGCTATCAGATGTGCTCTTAC 	7
-----------------------------------------------------CGCTATCAGATGTGCTCTT 	5
------------------------------------------------------GCTATCAGATGTGCTCTTAC 	1

Overlaps with: MNEST025021 MNEST025022
Overlaps with miRBase pre-miRNAs: cin-mir-4030
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	AAAGTGCAACTTTGATAGTG	CTATCAGATGTGCTCTTACA	up	4	0

Secondary structure

ACAAACTGAAGCAGTTGGTGCAAAGTGCAACTTTGATAGTGTGTAACTCTCCACGCTATCAGATGTGCTCTTACACGCTCGCTGCTTACTTTC
---------------------AAAGTGCAACTTTGATAGTG 	1313
---------------------AAAGTGCAACTTTGATAGT 	1

Overlaps with: MNEST025021 MNEST025022
Overlaps with miRBase pre-miRNAs: cin-mir-4030
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Ciona intestinalis	GSM343285	AAAGTGCAACTTTGATAGTGTG	CGCTATCAGATGTGCTCTTACA	up	4	0

Secondary structure

ACAAACTGAAGCAGTTGGTGCAAAGTGCAACTTTGATAGTGTGTAACTCTCCACGCTATCAGATGTGCTCTTACACGCTCGCTGCTTACTTTC
--------------------CAAAGTGCAACTTTGATAGTGT 	2
---------------------AAAGTGCAACTTTGATAGTGTGT 	542
---------------------AAAGTGCAACTTTGATAGTGTG 	1443
---------------------AAAGTGCAACTTTGATAGTGT 	125
---------------------AAAGTGCAACTTTGATAGTG 	201
---------------------AAAGTGCAACTTTGATAGT 	4
----------------------AAGTGCAACTTTGATAGTGTGT 	2
----------------------AAGTGCAACTTTGATAGTGTG 	1
-----------------------------------------------------CGCTATCAGATGTGCTCTTAC 	2
-----------------------------------------------------CGCTATCAGATGTGCTCTTA 	1
-----------------------------------------------------CGCTATCAGATGTGCTCTT 	2

Overlaps with: MNEST025021 MNEST025022
Overlaps with miRBase pre-miRNAs: cin-mir-4030
HuntMi prediction: true miRNA