miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAATGCCAGTCGTTGCAGGAGT

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 AAATGCCAGTCGTTGCAGGAGT CCCTACAACGCTGCGCATATGC down 3 2


Secondary structure

GATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAACGCTGCGCATATGCATGAACACAATGAAAATGTAAATGCCAGTCGTTGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAAC
------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGA 	2
------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGAGT 	18
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAGTT 	4
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAGT 	126
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGA 	2
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAG 	13
----------------------------------------------------------------------------TGCCAGTCGTTGCAGGAGT 	1


Overlaps with: MNEST038382
Overlaps with miRBase pre-miRNAs: cel-mir-357
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 AAATGCCAGTCGTTGCAGGAGT CCCTACAACGCTGCGCATATGC down 3 2


Secondary structure

GATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAACGCTGCGCATATGCATGAACACAATGAAAATGTAAATGCCAGTCGTTGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAAC
------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGA 	1
------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGAG 	5
------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGAGT 	19
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAGT 	126
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGA 	1
-------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAG 	23
--------------------------------------------------------------------------AATGCCAGTCGTTGCAGGAGT 	1


Overlaps with: MNEST038382
Overlaps with miRBase pre-miRNAs: cel-mir-357
HuntMi prediction: true miRNA