miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AAATTGACTCTAGTAGGGAGTC

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM286605-9793 AAATTGACTCTAGTAGGGAGTC CTCCCTAACGGAGTCAGATTGA up 3 0


Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
---------------------AAATTGACTCTAGTAGGGAGTC 	5
---------------------AAATTGACTCTAGTAGGGAGT 	1
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	2

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated AAATTGACTCTAGTAGGGAGTC CTCCCTAACGGAGTCAGATTGA up 3 0


Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
-------------------TCAAATTGACTCTAGTAGGGAGT 	5
-------------------TCAAATTGACTCTAGTAGGGAGTC 	2
--------------------CAAATTGACTCTAGTAGGGAG 	1
--------------------CAAATTGACTCTAGTAGGGAGT 	16
--------------------CAAATTGACTCTAGTAGGGAGTC 	2
---------------------AAATTGACTCTAGTAGGGAGT 	583
---------------------AAATTGACTCTAGTAGGGAGTCC 	12
---------------------AAATTGACTCTAGTAGGGAG 	148
---------------------AAATTGACTCTAGTAGGGAGTC 	1324
---------------------AAATTGACTCTAGTAGGGA 	6
----------------------AATTGACTCTAGTAGGGAGTCC 	1
----------------------AATTGACTCTAGTAGGGAGT 	18
----------------------AATTGACTCTAGTAGGGAG 	1
----------------------AATTGACTCTAGTAGGGAGTC 	46
-----------------------ATTGACTCTAGTAGGGAGT 	2
-----------------------ATTGACTCTAGTAGGGAGTC 	14
-----------------------ATTGACTCTAGTAGGGAGTCC 	1
------------------------TTGACTCTAGTAGGGAGTC 	2
------------------------TTGACTCTAGTAGGGAGTCC 	2
-------------------------------------------------------ACTCCCTAACGGAGTCAGATTG 	1
-------------------------------------------------------ACTCCCTAACGGAGTCAGATTGA 	1
--------------------------------------------------------CTCCCTAACGGAGTCAGAT 	2
--------------------------------------------------------CTCCCTAACGGAGTCAGATT 	13
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	352
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	10
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	569
---------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	47
---------------------------------------------------------TCCCTAACGGAGTCAGATTG 	16
---------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	107
----------------------------------------------------------CCCTAACGGAGTCAGATTGA 	2
-----------------------------------------------------------CCTAACGGAGTCAGATTGAG 	2

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA