miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AACACACCCAGCTAACCTTTTT

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
----------------------AGAGGTTTTCTGGGTCTCTGTTTCTT 	1
----------------------AGAGGTTTTCTGGGTCTCT 	7
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	107
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	140
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	25
----------------------AGAGGTTTTCTGGGTCTCTG 	16
----------------------AGAGGTTTTCTGGGTCTCTGT 	54
----------------------AGAGGTTTTCTGGGTCTCTGTT 	38
-----------------------GAGGTTTTCTGGGTCTCTGTTTC 	4
-----------------------GAGGTTTTCTGGGTCTCTGTT 	2
-----------------------GAGGTTTTCTGGGTCTCTGT 	1
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	11
------------------------AGGTTTTCTGGGTCTCTGTTTCT 	2
------------------------AGGTTTTCTGGGTCTCTGTTT 	1
--------------------------GTTTTCTGGGTCTCTGTTT 	1
-----------------------------------------------------------AAACACACCCAGCTAACCTTTTT 	1
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	136
------------------------------------------------------------AACACACCCAGCTAACCTTT 	9
------------------------------------------------------------AACACACCCAGCTAACCTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	85
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	687
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	3
-------------------------------------------------------------ACACACCCAGCTAACCTTTTTT 	6
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	22
--------------------------------------------------------------CACACCCAGCTAACCTTTTTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
----------------------AGAGGTTTTCTGGGTCTCTGT 	21
----------------------AGAGGTTTTCTGGGTCTCT 	5
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	38
----------------------AGAGGTTTTCTGGGTCTCTGTT 	15
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	32
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	8
----------------------AGAGGTTTTCTGGGTCTCTG 	10
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	232
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	69
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	24
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	4
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
----------------------AGAGGTTTTCTGGGTCTCTGTTTCTT 	2
----------------------AGAGGTTTTCTGGGTCTCTGT 	42
----------------------AGAGGTTTTCTGGGTCTCT 	8
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	117
----------------------AGAGGTTTTCTGGGTCTCTGTT 	27
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	75
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	22
----------------------AGAGGTTTTCTGGGTCTCTG 	11
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	14
-----------------------GAGGTTTTCTGGGTCTCTGTTTC 	6
-----------------------GAGGTTTTCTGGGTCTCTGT 	3
------------------------AGGTTTTCTGGGTCTCTGTTT 	1
-------------------------GGTTTTCTGGGTCTCTGTTT 	1
------------------------------------------------------------AACACACCCAGCTAACCTTT 	7
------------------------------------------------------------AACACACCCAGCTAACCTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	538
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	134
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	79
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	13
-------------------------------------------------------------ACACACCCAGCTAACCTTT 	1
-------------------------------------------------------------ACACACCCAGCTAACCTTTTTT 	9
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
---------------------GAGAGGTTTTCTGGGTCTCTGTTT 	1
----------------------AGAGGTTTTCTGGGTCTCT 	14
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	68
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	134
----------------------AGAGGTTTTCTGGGTCTCTG 	13
----------------------AGAGGTTTTCTGGGTCTCTGT 	86
----------------------AGAGGTTTTCTGGGTCTCTGTT 	44
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	18
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	30
-----------------------GAGGTTTTCTGGGTCTCTGTTTC 	4
-----------------------GAGGTTTTCTGGGTCTCTGTT 	2
-----------------------GAGGTTTTCTGGGTCTCTGT 	1
------------------------AGGTTTTCTGGGTCTCTGTTT 	3
------------------------AGGTTTTCTGGGTCTCTGTTTCT 	1
-------------------------GGTTTTCTGGGTCTCTGTTT 	2
-----------------------------------------------------------AAACACACCCAGCTAACCTTT 	1
-----------------------------------------------------------AAACACACCCAGCTAACCTTTT 	1
-----------------------------------------------------------AAACACACCCAGCTAACCTTTTT 	1
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	263
------------------------------------------------------------AACACACCCAGCTAACCTTT 	18
------------------------------------------------------------AACACACCCAGCTAACCTT 	4
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	99
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	1072
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	6
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	13
-------------------------------------------------------------ACACACCCAGCTAACCTTTTTT 	9
--------------------------------------------------------------CACACCCAGCTAACCTTTTTT 	1
---------------------------------------------------------------ACACCCAGCTAACCTTTTT 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539867 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
----------------------AGAGGTTTTCTGGGTCTCTGTTTCTT 	2
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	131
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	182
----------------------AGAGGTTTTCTGGGTCTCTG 	4
----------------------AGAGGTTTTCTGGGTCTCT 	8
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	20
----------------------AGAGGTTTTCTGGGTCTCTGTT 	15
----------------------AGAGGTTTTCTGGGTCTCTGT 	7
-----------------------GAGGTTTTCTGGGTCTCTGTTTCT 	1
-----------------------GAGGTTTTCTGGGTCTCTGTTTC 	4
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	1
------------------------AGGTTTTCTGGGTCTCTGTTTC 	2
-----------------------------------------------------------AAACACACCCAGCTAACCTTTTTT 	1
-----------------------------------------------------------AAACACACCCAGCTAACCTTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	187
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	763
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	105
------------------------------------------------------------AACACACCCAGCTAACCTTT 	9
------------------------------------------------------------AACACACCCAGCTAACCTT 	3
-------------------------------------------------------------ACACACCCAGCTAACCTTTTTT 	14
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	24
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	2
-------------------------------------------------------------ACACACCCAGCTAACCTTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527279-2112 AACACACCCAGCTAACCTTTTT AGAGGTTTTCTGGGTCTCTGTTTC down 3 2


Secondary structure

TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCCCATC
----------------------AGAGGTTTTCTGGGTCTCT 	17
----------------------AGAGGTTTTCTGGGTCTCTGTTTC 	178
----------------------AGAGGTTTTCTGGGTCTCTGTTT 	170
----------------------AGAGGTTTTCTGGGTCTCTGTTTCT 	39
----------------------AGAGGTTTTCTGGGTCTCTG 	32
----------------------AGAGGTTTTCTGGGTCTCTGT 	133
----------------------AGAGGTTTTCTGGGTCTCTGTT 	76
-----------------------GAGGTTTTCTGGGTCTCTGTTTC 	7
-----------------------GAGGTTTTCTGGGTCTCTGT 	1
-----------------------GAGGTTTTCTGGGTCTCTGTTT 	14
-----------------------GAGGTTTTCTGGGTCTCTGTTTCT 	1
-----------------------GAGGTTTTCTGGGTCTCTG 	1
------------------------AGGTTTTCTGGGTCTCTGTTTCT 	1
------------------------AGGTTTTCTGGGTCTCTGTTTC 	1
------------------------AGGTTTTCTGGGTCTCTGT 	1
------------------------AGGTTTTCTGGGTCTCTGTT 	1
-------------------------GGTTTTCTGGGTCTCTGTTT 	1
-------------------------GGTTTTCTGGGTCTCTGTT 	3
-----------------------------------------------------------AAACACACCCAGCTAACCTTT 	1
------------------------------------------------------------AACACACCCAGCTAACCTTTT 	235
------------------------------------------------------------AACACACCCAGCTAACCTTT 	30
------------------------------------------------------------AACACACCCAGCTAACCTT 	2
------------------------------------------------------------AACACACCCAGCTAACCTTTTTT 	102
------------------------------------------------------------AACACACCCAGCTAACCTTTTT 	1151
-------------------------------------------------------------ACACACCCAGCTAACCTTTT 	4
-------------------------------------------------------------ACACACCCAGCTAACCTTTTTT 	12
-------------------------------------------------------------ACACACCCAGCTAACCTTTTT 	22
---------------------------------------------------------------ACACCCAGCTAACCTTTTT 	1



HuntMi prediction: true miRNA