miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AACACACCTGTTCAAGGATTCA

selected species: Mus musculus

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539877-5198	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAAT 	1
----------------------AATCCTTGGAACCTAGGTGTGAA 	1
----------------------AATCCTTGGAACCTAGGTGTGA 	5
----------------------AATCCTTGGAACCTAGGTGTG 	1
----------------------AATCCTTGGAACCTAGGTGT 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	24
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	13
-----------------------------------------------------------AACACACCTGTTCAAGGATT 	5

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539835	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAAT 	16
----------------------AATCCTTGGAACCTAGGTGTGA 	23
----------------------AATCCTTGGAACCTAGGTGTG 	8
----------------------AATCCTTGGAACCTAGGTGTGAATG 	13
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	12
----------------------AATCCTTGGAACCTAGGTGTGAA 	5
--------------------------CTTGGAACCTAGGTGTGAATGC 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	158
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	64
-----------------------------------------------------------AACACACCTGTTCAAGGATT 	1
-----------------------------------------------------------AACACACCTGTTCAAGGAT 	5
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAAA 	4
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	22

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539848	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATG 	12
----------------------AATCCTTGGAACCTAGGTGTGAAT 	27
----------------------AATCCTTGGAACCTAGGTGTGA 	24
----------------------AATCCTTGGAACCTAGGTGTG 	9
----------------------AATCCTTGGAACCTAGGTGTGAA 	7
----------------------AATCCTTGGAACCTAGGTGT 	6
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	39
--------------------------CTTGGAACCTAGGTGTGAAT 	1
----------------------------------------------------------CAACACACCTGTTCAAGGATTCA 	2
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	253
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	84
-----------------------------------------------------------AACACACCTGTTCAAGGATT 	2
-----------------------------------------------------------AACACACCTGTTCAAGGAT 	2
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	42
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAAA 	4

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539853	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATG 	4
----------------------AATCCTTGGAACCTAGGTGTGAAT 	31
----------------------AATCCTTGGAACCTAGGTGTGA 	28
----------------------AATCCTTGGAACCTAGGTGTG 	8
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	22
----------------------AATCCTTGGAACCTAGGTGTGAA 	7
----------------------AATCCTTGGAACCTAGGTGT 	10
----------------------AATCCTTGGAACCTAGGTG 	2
----------------------------------------------------------CAACACACCTGTTCAAGGATTCAA 	1
----------------------------------------------------------CAACACACCTGTTCAAGGATTCA 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAAA 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	48
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	263
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	98
-----------------------------------------------------------AACACACCTGTTCAAGGATT 	3
-----------------------------------------------------------AACACACCTGTTCAAGGAT 	2

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539878	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	2
----------------------AATCCTTGGAACCTAGGTGTGAATG 	2
----------------------AATCCTTGGAACCTAGGTGTGAAT 	1
----------------------AATCCTTGGAACCTAGGTGTGA 	1
----------------------AATCCTTGGAACCTAGGTGTG 	2
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	7
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	33
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	18

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539873	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	15
----------------------AATCCTTGGAACCTAGGTGTGAATG 	4
----------------------AATCCTTGGAACCTAGGTGTGAAT 	2
----------------------AATCCTTGGAACCTAGGTGTGAA 	2
----------------------AATCCTTGGAACCTAGGTGTGA 	15
----------------------AATCCTTGGAACCTAGGTGTG 	5
----------------------AATCCTTGGAACCTAGGTGT 	2
----------------------AATCCTTGGAACCTAGGTG 	1
-----------------------ATCCTTGGAACCTAGGTGTGAATGCT 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	13
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	134
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	103
-----------------------------------------------------------AACACACCTGTTCAAGGATT 	6

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539867	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	3
----------------------AATCCTTGGAACCTAGGTGTGAAT 	4
----------------------AATCCTTGGAACCTAGGTGTGAA 	5
----------------------AATCCTTGGAACCTAGGTGTGA 	7
----------------------AATCCTTGGAACCTAGGTGTG 	7
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAAA 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	32
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	92
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	16

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539854	AACACACCTGTTCAAGGATTCA	AATCCTTGGAACCTAGGTGTGAATG	down	3	3

Secondary structure

TTCTTGCTTGCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTTGTCT
----------------------AATCCTTGGAACCTAGGTGTGAATGC 	3
----------------------AATCCTTGGAACCTAGGTGTGAATG 	3
----------------------AATCCTTGGAACCTAGGTGTGAAT 	10
----------------------AATCCTTGGAACCTAGGTGTGAA 	3
----------------------AATCCTTGGAACCTAGGTGTGA 	18
----------------------AATCCTTGGAACCTAGGTGTG 	3
----------------------AATCCTTGGAACCTAGGTGT 	5
----------------------AATCCTTGGAACCTAGGTG 	1
----------------------------------------------------------CAACACACCTGTTCAAGGATTCAA 	1
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAAA 	4
-----------------------------------------------------------AACACACCTGTTCAAGGATTCAA 	53
-----------------------------------------------------------AACACACCTGTTCAAGGATTCA 	181
-----------------------------------------------------------AACACACCTGTTCAAGGATTC 	79

Overlaps with: MNEST032032 MNEST032033 MNEST032881
Overlaps with miRBase pre-miRNAs: mmu-mir-362 rno-mir-362
HuntMi prediction: true miRNA