miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AACATAGAGGAAATTCCACGT

selected species: Homo sapiens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM494810_Normal_2 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTTA 	1
---------------------------------------------------------TAAACATAGAGGAAATTCCACG 	1
---------------------------------------------------------TAAACATAGAGGAAATTCCA 	1
----------------------------------------------------------AAACATAGAGGAAATTCCACG 	4
----------------------------------------------------------AAACATAGAGGAAATTCCACGT 	1
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTT 	6
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	37
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	799
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	21
------------------------------------------------------------ACATAGAGGAAATTCCACGTT 	1
-------------------------------------------------------------CATAGAGGAAATTCCACGTTTT 	1
-------------------------------------------------------------CATAGAGGAAATTCCACGTTT 	1

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531974 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
----------------------------------------------------------AAACATAGAGGAAATTCCACG 	1
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	10
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	77
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	11
-----------------------------------------------------------AACATAGAGGAAATTCCAC 	4
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTT 	1
------------------------------------------------------------ACATAGAGGAAATTCCACGTTT 	2

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531982 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTTA 	2
-----------------------TGGATATTCCTTCTATGTTTA 	1
------------------------GGATATTCCTTCTATGTTTA 	1
---------------------------------------------------------TAAACATAGAGGAAATTCC 	2
----------------------------------------------------------AAACATAGAGGAAATTCCACG 	9
----------------------------------------------------------AAACATAGAGGAAATTCCAC 	3
----------------------------------------------------------AAACATAGAGGAAATTCCA 	1
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTT 	22
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	210
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	2344
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	413
-----------------------------------------------------------AACATAGAGGAAATTCCAC 	167
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTTT 	1
------------------------------------------------------------ACATAGAGGAAATTCCACGT 	13
------------------------------------------------------------ACATAGAGGAAATTCCACGTTT 	3
------------------------------------------------------------ACATAGAGGAAATTCCACGTT 	5
------------------------------------------------------------ACATAGAGGAAATTCCACG 	3
------------------------------------------------------------ACATAGAGGAAATTCCACGTTTT 	1
-------------------------------------------------------------CATAGAGGAAATTCCACGT 	1

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531978 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	45
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	14
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	5

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531986-13294 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	217
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	59
-----------------------------------------------------------AACATAGAGGAAATTCCAC 	77
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	20
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTT 	2
------------------------------------------------------------ACATAGAGGAAATTCCACGTT 	2

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531975 AACATAGAGGAAATTCCACGT GTGGATATTCCTTCTATGTTTA down 3 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGC
-----------------------TGGATATTCCTTCTATGTTTAT 	1
---------------------------------------------------------TAAACATAGAGGAAATTCCAC 	1
-----------------------------------------------------------AACATAGAGGAAATTCCACGTT 	31
-----------------------------------------------------------AACATAGAGGAAATTCCACGT 	296
-----------------------------------------------------------AACATAGAGGAAATTCCACG 	68
-----------------------------------------------------------AACATAGAGGAAATTCCAC 	54
-----------------------------------------------------------AACATAGAGGAAATTCCACGTTT 	1
------------------------------------------------------------ACATAGAGGAAATTCCACGTTT 	2
------------------------------------------------------------ACATAGAGGAAATTCCACGTT 	1

Overlaps with: MNEST026827
Overlaps with miRBase pre-miRNAs: cfa-mir-376c hsa-mir-376c ggo-mir-376c ppy-mir-376c ptr-mir-376c mml-mir-376c
HuntMi prediction: true miRNA