miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AACATAGAGGAAATTTCACGT

selected species: Mus musculus

14 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
---------------------GGTGGATATTCCTTCTATGTT 	1
---------------------GGTGGATATTCCTTCTATG 	1
----------------------GTGGATATTCCTTCTATGTT 	1
----------------------GTGGATATTCCTTCTATGTTT 	13
-----------------------TGGATATTCCTTCTATGTTT 	1
-----------------------TGGATATTCCTTCTATGTTTAT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	27
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	712
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	23
------------------------------------------------------------ACATAGAGGAAATTTCACGTT 	5
------------------------------------------------------------ACATAGAGGAAATTTCACGTTT 	1
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	12
-------------------------------------------------------------CATAGAGGAAATTTCACGT 	2

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTT 	2
----------------------GTGGATATTCCTTCTATGTTTAT 	1
-----------------------TGGATATTCCTTCTATGTTTAT 	1
-----------------------TGGATATTCCTTCTATGTTT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	10
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	2
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	165
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	6
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	2

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539855	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	9
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	2
------------------------------------------------------------ACATAGAGGAAATTTCACGTT 	2

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM527276	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTT 	13
-----------------------TGGATATTCCTTCTATGTTT 	1
----------------------------------------------------------AAACATAGAGGAAATTTCACGT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	11
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	399
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	15
------------------------------------------------------------ACATAGAGGAAATTTCACG 	1
------------------------------------------------------------ACATAGAGGAAATTTCACGTT 	2
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	12

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539869	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTT 	1
----------------------GTGGATATTCCTTCTATGTT 	1
----------------------GTGGATATTCCTTCTATGTTTAT 	2
----------------------GTGGATATTCCTTCTATGTTTA 	2
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	8
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	36
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	3

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM527277-2110	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTT 	2
----------------------GTGGATATTCCTTCTATGTTT 	32
-----------------------TGGATATTCCTTCTATGTTT 	1
----------------------------------------------------------AAACATAGAGGAAATTTCACGT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	36
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	20
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	888
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	5
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	8

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539878	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	6
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	1

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539873	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	2
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	6
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	1

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539875	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	3
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	28
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	1
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	1

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539867	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTTAT 	1
----------------------------------------------------------AAACATAGAGGAAATTTCACGT 	1
----------------------------------------------------------AAACATAGAGGAAATTTCACG 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	35
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	457
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	15
-----------------------------------------------------------AACATAGAGGAAATTTCACGTTT 	4
------------------------------------------------------------ACATAGAGGAAATTTCACGTTT 	1
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	2

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539876	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	5
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	1

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539854	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTTTA 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	5
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	29
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	2
-----------------------------------------------------------AACATAGAGGAAATTTCACGTTT 	1

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM527279-2112	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTT 	1
----------------------GTGGATATTCCTTCTATGTTTA 	1
----------------------GTGGATATTCCTTCTATGTTT 	22
-----------------------TGGATATTCCTTCTATGTTTA 	1
-----------------------TGGATATTCCTTCTATGTTT 	7
---------------------------------------------------------TAAACATAGAGGAAATTTCACG 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	35
-----------------------------------------------------------AACATAGAGGAAATTTCACGTTT 	2
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	750
-----------------------------------------------------------AACATAGAGGAAATTTCAC 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	23
------------------------------------------------------------ACATAGAGGAAATTTCACGTT 	2
------------------------------------------------------------ACATAGAGGAAATTTCACGT 	12
-------------------------------------------------------------CATAGAGGAAATTTCACGT 	2

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM539874	AACATAGAGGAAATTTCACGT	GTGGATATTCCTTCTATGTTTA	down	3	1

Secondary structure

TAAATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGC
----------------------GTGGATATTCCTTCTATGTT 	1
----------------------GTGGATATTCCTTCTATGTTTA 	1
-----------------------------------------------------------AACATAGAGGAAATTTCACGT 	39
-----------------------------------------------------------AACATAGAGGAAATTTCACG 	5
-----------------------------------------------------------AACATAGAGGAAATTTCACGTT 	7

Overlaps with: MNEST032047
Overlaps with miRBase pre-miRNAs: mmu-mir-376c
HuntMi prediction: true miRNA