miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AACCCGTAAATCCGAACTTGTG

selected species: Drosophila melanogaster



17 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTG 	1
----------AAACCCGTAAATCCGAACTTGTG 	6
-----------AACCCGTAAATCCGAACTTG 	4
-----------AACCCGTAAATCCGAACTTGT 	51
-----------AACCCGTAAATCCGAACTTGTG 	474
------------ACCCGTAAATCCGAACTTGTG 	12
------------ACCCGTAAATCCGAACTTGT 	1
------------ACCCGTAAATCCGAACTTGTGC 	1
-------------CCCGTAAATCCGAACTTGT 	2
-------------CCCGTAAATCCGAACTTGTG 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	5
--------------------------------------------------CAAGACCGGCATTATGGGAG 	5
--------------------------------------------------CAAGACCGGCATTATGGGAGTCT 	3
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	36

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGT 	2
----------AAACCCGTAAATCCGAACTTGTG 	3
-----------AACCCGTAAATCCGAACTTGT 	28
-----------AACCCGTAAATCCGAACTTGTG 	157
------------ACCCGTAAATCCGAACTTGTG 	7
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	3
--------------------------------------------------CAAGACCGGCATTATGGGAG 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	17

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGT 	14
----------AAACCCGTAAATCCGAACTT 	1
----------AAACCCGTAAATCCGAACTTG 	3
----------AAACCCGTAAATCCGAACTTGTG 	26
-----------AACCCGTAAATCCGAACTTGT 	564
-----------AACCCGTAAATCCGAACTTGTGC 	2
-----------AACCCGTAAATCCGAACTT 	3
-----------AACCCGTAAATCCGAACTTGTG 	2779
-----------AACCCGTAAATCCGAACTTG 	57
------------ACCCGTAAATCCGAACTTGTG 	82
------------ACCCGTAAATCCGAACTTGT 	14
------------ACCCGTAAATCCGAACTTGTGC 	5
-------------CCCGTAAATCCGAACTTGTG 	1
--------------CCGTAAATCCGAACTTGTG 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	24
--------------------------------------------------CAAGACCGGCATTATGGGAG 	5
--------------------------------------------------CAAGACCGGCATTATGGGAGTCT 	3
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	78
---------------------------------------------------AAGACCGGCATTATGGGAGTC 	2

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399105-16286 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGT 	1
-----------AACCCGTAAATCCGAACTTGTG 	20
-------------CCCGTAAATCCGAACTTGTG 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM360262-14327 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTG 	1
----------AAACCCGTAAATCCGAACTTGTG 	5
-----------AACCCGTAAATCCGAACTTGT 	7
-----------AACCCGTAAATCCGAACTTGTG 	414
------------ACCCGTAAATCCGAACTTGTG 	10
-------------CCCGTAAATCCGAACTTGTG 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	3
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	26
---------------------------------------------------AAGACCGGCATTATGGGAGTCT 	2

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM385822-16273 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGT 	14
-----------AACCCGTAAATCCGAACTTGTG 	49
-----------AACCCGTAAATCCGAACTTG 	1
------------ACCCGTAAATCCGAACTTGTG 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
--------AGAAACCCGTAAATCCGAACTT 	1
----------AAACCCGTAAATCCGAACTTGT 	14
----------AAACCCGTAAATCCGAACTTG 	3
----------AAACCCGTAAATCCGAACTTGTG 	24
-----------AACCCGTAAATCCGAACTTGT 	802
-----------AACCCGTAAATCCGAACTT 	1
-----------AACCCGTAAATCCGAACTTGTG 	2788
-----------AACCCGTAAATCCGAACTTG 	87
------------ACCCGTAAATCCGAACTTGTG 	78
------------ACCCGTAAATCCGAACTTG 	1
------------ACCCGTAAATCCGAACTTGT 	17
------------ACCCGTAAATCCGAACTTGTGC 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	44
--------------------------------------------------CAAGACCGGCATTATGGGAG 	5
--------------------------------------------------CAAGACCGGCATTATGGGAGTCT 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	5

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGT 	27
----------AAACCCGTAAATCCGAACTTG 	4
----------AAACCCGTAAATCCGAACTTGTG 	37
-----------AACCCGTAAATCCGAACTTGT 	1173
-----------AACCCGTAAATCCGAACTTGTGC 	1
-----------AACCCGTAAATCCGAACTT 	6
-----------AACCCGTAAATCCGAACTTGTG 	3925
-----------AACCCGTAAATCCGAACTTG 	87
------------ACCCGTAAATCCGAACTTGTG 	140
------------ACCCGTAAATCCGAACTTG 	4
------------ACCCGTAAATCCGAACTTGT 	20
------------ACCCGTAAATCCGAACTTGTGC 	4
-------------CCCGTAAATCCGAACTTGTG 	1
--------------CCGTAAATCCGAACTTGTG 	3
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	8
--------------------------------------------------CAAGACCGGCATTATGGGAG 	4
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	24
---------------------------------------------------AAGACCGGCATTATGGGAGTCT 	2
---------------------------------------------------AAGACCGGCATTATGGGAGTC 	2

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM385821-16268 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGTG 	120
------------ACCCGTAAATCCGAACTTGTG 	1
--------------CCGTAAATCCGAACTTGTG 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM360260-14326 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGT 	1
----------AAACCCGTAAATCCGAACTTGTG 	2
-----------AACCCGTAAATCCGAACTTGT 	16
-----------AACCCGTAAATCCGAACTTGTG 	567
------------ACCCGTAAATCCGAACTTGTG 	12
-------------CCCGTAAATCCGAACTTGTG 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	5
--------------------------------------------------CAAGACCGGCATTATGGGAG 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	59

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM322543-14323 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGTG 	9
----------AAACCCGTAAATCCGAACTTGT 	16
-----------AACCCGTAAATCCGAACTTGTG 	946
-----------AACCCGTAAATCCGAACTTG 	22
-----------AACCCGTAAATCCGAACTTGT 	184
-----------AACCCGTAAATCCGAACTTGTGC 	4
------------ACCCGTAAATCCGAACTTGTG 	43
------------ACCCGTAAATCCGAACTTGTGC 	1
--------------CCGTAAATCCGAACTTGTG 	3
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	6
--------------------------------------------------CAAGACCGGCATTATGGGAG 	5
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	86
---------------------------------------------------AAGACCGGCATTATGGGAGTCT 	7

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM286604-9792 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGT 	17
-----------AACCCGTAAATCCGAACTTGTG 	68
------------ACCCGTAAATCCGAACTTGTG 	1
-------------CCCGTAAATCCGAACTTGT 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	11

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM385744-16261 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGT 	9
-----------AACCCGTAAATCCGAACTTGTG 	49
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM322208-14317 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGTG 	14
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	3

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM385748-16264 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGTG 	90
-----------AACCCGTAAATCCGAACTTGT 	21
-----------AACCCGTAAATCCGAACTTG 	2
------------ACCCGTAAATCCGAACTTGTG 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM399110-16285 AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
-----------AACCCGTAAATCCGAACTTGTG 	5

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated AACCCGTAAATCCGAACTTGTG CAAGACCGGCATTATGGGAGTC up 6 0


Secondary structure

CCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATG
----------AAACCCGTAAATCCGAACTTGTGC 	1
----------AAACCCGTAAATCCGAACTTGTG 	18
----------AAACCCGTAAATCCGAACTTG 	1
----------AAACCCGTAAATCCGAACTTGT 	7
-----------AACCCGTAAATCCGAACTTGTG 	1851
-----------AACCCGTAAATCCGAACTTG 	43
-----------AACCCGTAAATCCGAACTTGT 	318
-----------AACCCGTAAATCCGAACTTGTGC 	1
------------ACCCGTAAATCCGAACTTGTG 	48
------------ACCCGTAAATCCGAACTTGT 	7
--------------CCGTAAATCCGAACTTGTG 	2
--------------------------------------------------CAAGACCGGCATTATGGGAGT 	6
--------------------------------------------------CAAGACCGGCATTATGGGAG 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGTCT 	1
--------------------------------------------------CAAGACCGGCATTATGGGAGTC 	16
-----------------------------------------------------GACCGGCATTATGGGAGTCTGT 	1

Overlaps with: MNEST036383 MNEST036384
Overlaps with miRBase pre-miRNAs: dya-mir-100 dse-mir-100 der-mir-100 dsi-mir-100 dmo-mir-100 dwi-mir-100 dvi-mir-100 dme-mir-100
HuntMi prediction: true miRNA