miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AACCCGTAGATCCGAACTTGTG

selected species: Danio rerio



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATC up 4 0


Secondary structure

AGAGACCTGCCTGCTGACACAAACCCGTAGATCCGAACTTGTGGTGACTGTCCACACAAGCTTGTATCTATAGGTATCTGTCTGTGTGGCCTTCAC
---------------------AACCCGTAGATCCGAACTTGTGG 	1
---------------------AACCCGTAGATCCGAACTTGTG 	2014
---------------------AACCCGTAGATCCGAACTTGT 	1293
---------------------AACCCGTAGATCCGAACTTG 	17
----------------------ACCCGTAGATCCGAACTTGTGGT 	1
----------------------ACCCGTAGATCCGAACTTGTG 	61
----------------------ACCCGTAGATCCGAACTTGT 	32
------------------------CCGTAGATCCGAACTTGTG 	1
--------------------------------------------------------CAAGCTTGTATCTATAGGTATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 AACCCGTAGATCCGAACTTGTG CAAGCTCGTGTCTATAGGTATG up 4 0


Secondary structure

GCAGTGATGCCAGCTGCCACAAACCCGTAGATCCGAACTTGTGGTGTCTCTGTGCACAAGCTCGTGTCTATAGGTATGTGTCTGCGAGGTGAACGC
---------------------AACCCGTAGATCCGAACTTGTGG 	1
---------------------AACCCGTAGATCCGAACTTGTG 	2014
---------------------AACCCGTAGATCCGAACTTGT 	1293
---------------------AACCCGTAGATCCGAACTTG 	17
----------------------ACCCGTAGATCCGAACTTGTGGT 	1
----------------------ACCCGTAGATCCGAACTTGTG 	61
----------------------ACCCGTAGATCCGAACTTGT 	32
------------------------CCGTAGATCCGAACTTGTG 	1
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATGT 	1
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATG 	178
--------------------------------------------------------CAAGCTCGTGTCTATAGGTAT 	1


Overlaps with: MNEST034264
Overlaps with miRBase pre-miRNAs: dre-mir-100-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATC up 4 0


Secondary structure

AGAGACCTGCCTGCTGACACAAACCCGTAGATCCGAACTTGTGGTGACTGTCCACACAAGCTTGTATCTATAGGTATCTGTCTGTGTGGCCTTCAC
---------------------AACCCGTAGATCCGAACTTGTGGTG 	2
---------------------AACCCGTAGATCCGAACTTGTGGT 	52
---------------------AACCCGTAGATCCGAACTTGTGG 	21
---------------------AACCCGTAGATCCGAACTTGTG 	1084
---------------------AACCCGTAGATCCGAACTTGT 	180
---------------------AACCCGTAGATCCGAACTTG 	1
----------------------ACCCGTAGATCCGAACTTGTG 	30
----------------------ACCCGTAGATCCGAACTTGT 	1
----------------------ACCCGTAGATCCGAACTTG 	1
--------------------------------------------------------CAAGCTTGTATCTATAGGTATC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540642 AACCCGTAGATCCGAACTTGTG CAAGCTCGTGTCTATAGGTATG up 4 0


Secondary structure

GCAGTGATGCCAGCTGCCACAAACCCGTAGATCCGAACTTGTGGTGTCTCTGTGCACAAGCTCGTGTCTATAGGTATGTGTCTGCGAGGTGAACGC
---------------------AACCCGTAGATCCGAACTTGTGGTGT 	21
---------------------AACCCGTAGATCCGAACTTGTGGTG 	2
---------------------AACCCGTAGATCCGAACTTGTGGT 	52
---------------------AACCCGTAGATCCGAACTTGTGG 	21
---------------------AACCCGTAGATCCGAACTTGTG 	1084
---------------------AACCCGTAGATCCGAACTTGT 	180
---------------------AACCCGTAGATCCGAACTTG 	1
----------------------ACCCGTAGATCCGAACTTGTGGTGT 	1
----------------------ACCCGTAGATCCGAACTTGTG 	30
----------------------ACCCGTAGATCCGAACTTGT 	1
----------------------ACCCGTAGATCCGAACTTG 	1
-------------------------CGTAGATCCGAACTTGTGGTGT 	1
-------------------------------------------------CTGTGCACAAGCTCGTGTCTATAGG 	1
----------------------------------------------------TGCACAAGCTCGTGTCTATAGGT 	2
-------------------------------------------------------ACAAGCTCGTGTCTATAGGTAT 	1
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATGT 	6
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATG 	9
--------------------------------------------------------CAAGCTCGTGTCTATAGGTAT 	11
---------------------------------------------------------AAGCTCGTGTCTATAGGTATGT 	1
---------------------------------------------------------AAGCTCGTGTCTATAGGTATG 	1


Overlaps with: MNEST034264
Overlaps with miRBase pre-miRNAs: dre-mir-100-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540643 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATC up 4 0


Secondary structure

AGAGACCTGCCTGCTGACACAAACCCGTAGATCCGAACTTGTGGTGACTGTCCACACAAGCTTGTATCTATAGGTATCTGTCTGTGTGGCCTTCAC
---------------------AACCCGTAGATCCGAACTTGTG 	1066
---------------------AACCCGTAGATCCGAACTTGT 	70
---------------------AACCCGTAGATCCGAACTT 	1
----------------------ACCCGTAGATCCGAACTTGTGG 	1
----------------------ACCCGTAGATCCGAACTTGTG 	21
--------------------------------------------------------CAAGCTTGTATCTATAGGTATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540643 AACCCGTAGATCCGAACTTGTG CAAGCTCGTGTCTATAGGTATG up 4 0


Secondary structure

GCAGTGATGCCAGCTGCCACAAACCCGTAGATCCGAACTTGTGGTGTCTCTGTGCACAAGCTCGTGTCTATAGGTATGTGTCTGCGAGGTGAACGC
---------------------AACCCGTAGATCCGAACTTGTG 	1066
---------------------AACCCGTAGATCCGAACTTGT 	70
---------------------AACCCGTAGATCCGAACTT 	1
----------------------ACCCGTAGATCCGAACTTGTGG 	1
----------------------ACCCGTAGATCCGAACTTGTG 	21
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATGT 	1
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATG 	35
--------------------------------------------------------CAAGCTCGTGTCTATAGGTAT 	7
---------------------------------------------------------AAGCTCGTGTCTATAGGTAT 	1


Overlaps with: MNEST034264
Overlaps with miRBase pre-miRNAs: dre-mir-100-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540646 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATC up 4 0


Secondary structure

AGAGACCTGCCTGCTGACACAAACCCGTAGATCCGAACTTGTGGTGACTGTCCACACAAGCTTGTATCTATAGGTATCTGTCTGTGTGGCCTTCAC
---------------------AACCCGTAGATCCGAACTTGTGG 	3
---------------------AACCCGTAGATCCGAACTTGTG 	12817
---------------------AACCCGTAGATCCGAACTTGT 	2958
---------------------AACCCGTAGATCCGAACTTG 	39
---------------------AACCCGTAGATCCGAACTT 	2
----------------------ACCCGTAGATCCGAACTTGTGGT 	1
----------------------ACCCGTAGATCCGAACTTGT 	66
----------------------ACCCGTAGATCCGAACTTGTGG 	10
----------------------ACCCGTAGATCCGAACTTGTG 	228
----------------------ACCCGTAGATCCGAACTTG 	2
-----------------------CCCGTAGATCCGAACTTGTG 	1
-------------------------CGTAGATCCGAACTTGTGGTGA 	1
--------------------------------------------------------CAAGCTTGTATCTATAGGTATCT 	1
--------------------------------------------------------CAAGCTTGTATCTATAGGTATC 	60



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540646 AACCCGTAGATCCGAACTTGTG CAAGCTCGTGTCTATAGGTATG up 4 0


Secondary structure

GCAGTGATGCCAGCTGCCACAAACCCGTAGATCCGAACTTGTGGTGTCTCTGTGCACAAGCTCGTGTCTATAGGTATGTGTCTGCGAGGTGAACGC
---------------------AACCCGTAGATCCGAACTTGTGG 	3
---------------------AACCCGTAGATCCGAACTTGTG 	12817
---------------------AACCCGTAGATCCGAACTTGT 	2958
---------------------AACCCGTAGATCCGAACTTG 	39
---------------------AACCCGTAGATCCGAACTT 	2
----------------------ACCCGTAGATCCGAACTTGTGGT 	1
----------------------ACCCGTAGATCCGAACTTGT 	66
----------------------ACCCGTAGATCCGAACTTGTGG 	10
----------------------ACCCGTAGATCCGAACTTGTG 	228
----------------------ACCCGTAGATCCGAACTTG 	2
-----------------------CCCGTAGATCCGAACTTGTG 	1
-------------------------------------------------------ACAAGCTCGTGTCTATAGGTATG 	3
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATGT 	12
--------------------------------------------------------CAAGCTCGTGTCTATAGGTATG 	2277
--------------------------------------------------------CAAGCTCGTGTCTATAGGTA 	3
--------------------------------------------------------CAAGCTCGTGTCTATAGGTAT 	38
---------------------------------------------------------AAGCTCGTGTCTATAGGTATG 	6


Overlaps with: MNEST034264
Overlaps with miRBase pre-miRNAs: dre-mir-100-2
HuntMi prediction: true miRNA