miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AACCCGTAGATCCGAACTTGTG

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATG up 4 0


Secondary structure

CTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTCATATTCCACACAAGCTTGTATCTATAGGTATGTGTCTGTC
-----------AACCCGTAGATCCGAACTTG 	1
-----------AACCCGTAGATCCGAACTTGTG 	248
-----------AACCCGTAGATCCGAACTTGTGG 	6
-----------AACCCGTAGATCCGAACTTGT 	35
----------------------------------------------CAAGCTTGTATCTATAGGTATG 	1

Overlaps with: MNEST025930
Overlaps with miRBase pre-miRNAs: gga-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATG up 4 0


Secondary structure

CTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTCATATTCCACACAAGCTTGTATCTATAGGTATGTGTCTGTC
-----------AACCCGTAGATCCGAACTTGTG 	173
-----------AACCCGTAGATCCGAACTTGT 	92
-----------AACCCGTAGATCCGAACTTG 	25

Overlaps with: MNEST025930
Overlaps with miRBase pre-miRNAs: gga-mir-100
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 AACCCGTAGATCCGAACTTGTG CAAGCTTGTATCTATAGGTATG up 4 0


Secondary structure

CTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTCATATTCCACACAAGCTTGTATCTATAGGTATGTGTCTGTC
-----------AACCCGTAGATCCGAACTTG 	8
-----------AACCCGTAGATCCGAACTTGTG 	472
-----------AACCCGTAGATCCGAACTTGT 	78
-----------AACCCGTAGATCCGAACTTGTGG 	1
----------------------------------------------CAAGCTTGTATCTATAGGTATG 	3

Overlaps with: MNEST025930
Overlaps with miRBase pre-miRNAs: gga-mir-100
HuntMi prediction: true miRNA