miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AACCCGTAGATCCGATCTTGTG

selected species: Danio rerio



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 AACCCGTAGATCCGATCTTGTG AAGCTCGATTCTGTGGGTCTC up 5 0


Secondary structure

AAGCTTTGACCACTTGTCACAAACCCGTAGATCCGATCTTGTGGCGTAATCGGCAACCCAAGCTCGATTCTGTGGGTCTCTGTCACTGTGGTGAACTC
---------------------AACCCGTAGATCCGATCTTGTG 	179
---------------------AACCCGTAGATCCGATCTTGT 	77
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTC 	2
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCT 	2


Overlaps with: MNEST034262
Overlaps with miRBase pre-miRNAs: dre-mir-99-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 AACCCGTAGATCCGATCTTGTG CAAGCTCGATTCTATGGGTCTC up 4 0


Secondary structure

CACTTGTCATTAACCCGTAGATCCGATCTTGTGATAAGTTTGATGGCACAAGCTCGATTCTATGGGTCTCTGTCTCTG
-----------AACCCGTAGATCCGATCTTGTGA 	6
-----------AACCCGTAGATCCGATCTTGTG 	179
-----------AACCCGTAGATCCGATCTTGT 	77
------------------------------------------------CAAGCTCGATTCTATGGGTCTC 	1


Overlaps with: MNEST034261
Overlaps with miRBase pre-miRNAs: dre-mir-99-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540645 AACCCGTAGATCCGATCTTGTG AAGCTCGATTCTGTGGGTCTC up 5 0


Secondary structure

AAGCTTTGACCACTTGTCACAAACCCGTAGATCCGATCTTGTGGCGTAATCGGCAACCCAAGCTCGATTCTGTGGGTCTCTGTCACTGTGGTGAACTC
--------------------AAACCCGTAGATCCGATCTTGT 	3
---------------------AACCCGTAGATCCGATCTTGTG 	595
---------------------AACCCGTAGATCCGATCTTGT 	206
---------------------AACCCGTAGATCCGATCTTG 	1
----------------------ACCCGTAGATCCGATCTTGTG 	1
----------------------ACCCGTAGATCCGATCTTGT 	2
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTC 	15
----------------------------------------------------------CAAGCTCGATTCTGTGGGTC 	1


Overlaps with: MNEST034262
Overlaps with miRBase pre-miRNAs: dre-mir-99-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540645 AACCCGTAGATCCGATCTTGTG CAAGCTCGATTCTATGGGTCTC up 4 0


Secondary structure

CACTTGTCATTAACCCGTAGATCCGATCTTGTGATAAGTTTGATGGCACAAGCTCGATTCTATGGGTCTCTGTCTCTG
-----------AACCCGTAGATCCGATCTTGTGA 	97
-----------AACCCGTAGATCCGATCTTGTG 	595
-----------AACCCGTAGATCCGATCTTGT 	206
-----------AACCCGTAGATCCGATCTTG 	1
------------ACCCGTAGATCCGATCTTGTG 	1
------------ACCCGTAGATCCGATCTTGT 	2


Overlaps with: MNEST034261
Overlaps with miRBase pre-miRNAs: dre-mir-99-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540642 AACCCGTAGATCCGATCTTGTG AAGCTCGATTCTGTGGGTCTC up 5 0


Secondary structure

AAGCTTTGACCACTTGTCACAAACCCGTAGATCCGATCTTGTGGCGTAATCGGCAACCCAAGCTCGATTCTGTGGGTCTCTGTCACTGTGGTGAACTC
---------------------AACCCGTAGATCCGATCTTGTGGCGT 	3
---------------------AACCCGTAGATCCGATCTTGTGGC 	5
---------------------AACCCGTAGATCCGATCTTGTGG 	6
---------------------AACCCGTAGATCCGATCTTGTG 	2651
---------------------AACCCGTAGATCCGATCTTGT 	681
---------------------AACCCGTAGATCCGATCTTG 	13
---------------------AACCCGTAGATCCGATCTT 	1
----------------------ACCCGTAGATCCGATCTTGTG 	5
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTCT 	4
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTC 	12
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCT 	3
----------------------------------------------------------CAAGCTCGATTCTGTGGGTC 	1
-----------------------------------------------------------AAGCTCGATTCTGTGGGTCTC 	1
-----------------------------------------------------------AAGCTCGATTCTGTGGGTCT 	1


Overlaps with: MNEST034262
Overlaps with miRBase pre-miRNAs: dre-mir-99-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540642 AACCCGTAGATCCGATCTTGTG CAAGCTCGATTCTATGGGTCTC up 4 0


Secondary structure

CACTTGTCATTAACCCGTAGATCCGATCTTGTGATAAGTTTGATGGCACAAGCTCGATTCTATGGGTCTCTGTCTCTG
-----------AACCCGTAGATCCGATCTTGTGATA 	4
-----------AACCCGTAGATCCGATCTTGTGAT 	19
-----------AACCCGTAGATCCGATCTTGTGA 	49
-----------AACCCGTAGATCCGATCTTGTG 	2651
-----------AACCCGTAGATCCGATCTTGT 	681
-----------AACCCGTAGATCCGATCTTG 	13
-----------AACCCGTAGATCCGATCTT 	1
------------ACCCGTAGATCCGATCTTGTGA 	1
------------ACCCGTAGATCCGATCTTGTG 	5
-------------------------------------------TGGCACAAGCTCGATTCTATGGGTCT 	2
----------------------------------------------CACAAGCTCGATTCTATGGGTCT 	1
-----------------------------------------------ACAAGCTCGATTCTATGGGTCT 	2
------------------------------------------------CAAGCTCGATTCTATGGGTCTCT 	5
------------------------------------------------CAAGCTCGATTCTATGGGTCTC 	28
------------------------------------------------CAAGCTCGATTCTATGGGTCT 	18
-------------------------------------------------AAGCTCGATTCTATGGGTCTC 	1
-------------------------------------------------AAGCTCGATTCTATGGGTCT 	1
--------------------------------------------------AGCTCGATTCTATGGGTCT 	2


Overlaps with: MNEST034261
Overlaps with miRBase pre-miRNAs: dre-mir-99-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540643 AACCCGTAGATCCGATCTTGTG AAGCTCGATTCTGTGGGTCTC up 5 0


Secondary structure

AAGCTTTGACCACTTGTCACAAACCCGTAGATCCGATCTTGTGGCGTAATCGGCAACCCAAGCTCGATTCTGTGGGTCTCTGTCACTGTGGTGAACTC
---------------------AACCCGTAGATCCGATCTTGTG 	526
---------------------AACCCGTAGATCCGATCTTGT 	76
---------------------AACCCGTAGATCCGATCTTG 	1
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTCT 	1
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTC 	6
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCT 	1
----------------------------------------------------------CAAGCTCGATTCTGTGGGT 	1


Overlaps with: MNEST034262
Overlaps with miRBase pre-miRNAs: dre-mir-99-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540643 AACCCGTAGATCCGATCTTGTG CAAGCTCGATTCTATGGGTCTC up 4 0


Secondary structure

CACTTGTCATTAACCCGTAGATCCGATCTTGTGATAAGTTTGATGGCACAAGCTCGATTCTATGGGTCTCTGTCTCTG
-----------AACCCGTAGATCCGATCTTGTG 	526
-----------AACCCGTAGATCCGATCTTGT 	76
-----------AACCCGTAGATCCGATCTTG 	1
-----------AACCCGTAGATCCGATCTTGTGA 	19
-----------------------------------------------ACAAGCTCGATTCTATGGGTC 	1
------------------------------------------------CAAGCTCGATTCTATGGGTCTC 	14
-------------------------------------------------AAGCTCGATTCTATGGGTCTC 	1


Overlaps with: MNEST034261
Overlaps with miRBase pre-miRNAs: dre-mir-99-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540646 AACCCGTAGATCCGATCTTGTG AAGCTCGATTCTGTGGGTCTC up 5 0


Secondary structure

AAGCTTTGACCACTTGTCACAAACCCGTAGATCCGATCTTGTGGCGTAATCGGCAACCCAAGCTCGATTCTGTGGGTCTCTGTCACTGTGGTGAACTC
--------------------AAACCCGTAGATCCGATCTTGT 	2
---------------------AACCCGTAGATCCGATCTTG 	2
---------------------AACCCGTAGATCCGATCTTGTGGC 	1
---------------------AACCCGTAGATCCGATCTTGTGG 	5
---------------------AACCCGTAGATCCGATCTTGTG 	2788
---------------------AACCCGTAGATCCGATCTTGT 	766
----------------------ACCCGTAGATCCGATCTTGT 	4
----------------------ACCCGTAGATCCGATCTTGTG 	6
------------------------CCGTAGATCCGATCTTGTG 	2
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTCT 	3
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCTC 	115
----------------------------------------------------------CAAGCTCGATTCTGTGGGTC 	1
----------------------------------------------------------CAAGCTCGATTCTGTGGGT 	1
----------------------------------------------------------CAAGCTCGATTCTGTGGGTCT 	2
-----------------------------------------------------------AAGCTCGATTCTGTGGGTCTC 	4


Overlaps with: MNEST034262
Overlaps with miRBase pre-miRNAs: dre-mir-99-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540646 AACCCGTAGATCCGATCTTGTG CAAGCTCGATTCTATGGGTCTC up 4 0


Secondary structure

CACTTGTCATTAACCCGTAGATCCGATCTTGTGATAAGTTTGATGGCACAAGCTCGATTCTATGGGTCTCTGTCTCTG
-----------AACCCGTAGATCCGATCTTGTGA 	600
-----------AACCCGTAGATCCGATCTTG 	2
-----------AACCCGTAGATCCGATCTTGTG 	2788
-----------AACCCGTAGATCCGATCTTGT 	766
------------ACCCGTAGATCCGATCTTGTGA 	6
------------ACCCGTAGATCCGATCTTGT 	4
------------ACCCGTAGATCCGATCTTGTG 	6
--------------CCGTAGATCCGATCTTGTG 	2
------------------------------------------------CAAGCTCGATTCTATGGGTCT 	1
------------------------------------------------CAAGCTCGATTCTATGGGTCTC 	7


Overlaps with: MNEST034261
Overlaps with miRBase pre-miRNAs: dre-mir-99-1
HuntMi prediction: true miRNA