miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AACGTATGTCGAGCAAACAT

selected species: Ciona intestinalis

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	AACGTATGTCGAGCAAACATTG	AGTTTGTCGCCATACTTCAC	up	4	2

Secondary structure

TCGTCCATTTGTTGTTGTGTCAACGTATGTCGAGCAAACATTGCATGAGTCATCATGACATGGCAAGTTTGTCGCCATACTTCACCACAGCTGCAAACTCACT
---------------------AACGTATGTCGAGCAAACATTGC 	14
---------------------AACGTATGTCGAGCAAACATTG 	208
---------------------AACGTATGTCGAGCAAACATT 	31
---------------------AACGTATGTCGAGCAAACAT 	4
---------------------AACGTATGTCGAGCAAACA 	2
------------------------GTATGTCGAGCAAACATTG 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCACC 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCAC 	2
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCA 	2
---------------------------------------------------------------CAAGTTTGTCGCCATACTTC 	2

Overlaps with: MNEST024969 MNEST024970 MNEST024971 MNEST024972
Overlaps with miRBase pre-miRNAs: cin-mir-4010
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343282-14442	AACGTATGTCGAGCAAACATTG	AGTTTGTCGCCATACTTCAC	up	4	2

Secondary structure

TCGTCCATTTGTTGTTGTGTCAACGTATGTCGAGCAAACATTGCATGAGTCATCATGACATGGCAAGTTTGTCGCCATACTTCACCACAGCTGCAAACTCACT
---------------------AACGTATGTCGAGCAAACATTG 	242
---------------------AACGTATGTCGAGCAAACATT 	95
---------------------AACGTATGTCGAGCAAACAT 	8
---------------------AACGTATGTCGAGCAAACA 	5
----------------------ACGTATGTCGAGCAAACATTG 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCAC 	2
---------------------------------------------------------------CAAGTTTGTCGCCATACTTC 	5

Overlaps with: MNEST024969 MNEST024970 MNEST024971 MNEST024972
Overlaps with miRBase pre-miRNAs: cin-mir-4010
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343284-14444	AACGTATGTCGAGCAAACATTG	AGTTTGTCGCCATACTTCAC	up	4	2

Secondary structure

TCGTCCATTTGTTGTTGTGTCAACGTATGTCGAGCAAACATTGCATGAGTCATCATGACATGGCAAGTTTGTCGCCATACTTCACCACAGCTGCAAACTCACT
-CGTCCATTTGTTGTTGTGT 	1
--GTCCATTTGTTGTTGTGTC 	1
---------------------AACGTATGTCGAGCAAACATTGC 	2
---------------------AACGTATGTCGAGCAAACATTG 	70
---------------------AACGTATGTCGAGCAAACATT 	1
---------------------AACGTATGTCGAGCAAACAT 	3
---------------------AACGTATGTCGAGCAAACA 	1
----------------------ACGTATGTCGAGCAAACATTG 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCACC 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCAC 	2

Overlaps with: MNEST024969 MNEST024970 MNEST024971 MNEST024972
Overlaps with miRBase pre-miRNAs: cin-mir-4010
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Ciona intestinalis	GSM343286	AACGTATGTCGAGCAAACAT	TTTGTCGCCATACTTCAC	up	5	1

Secondary structure

TCGTCCATTTGTTGTTGTGTCAACGTATGTCGAGCAAACATTGCATGAGTCATCATGACATGGCAAGTTTGTCGCCATACTTCACCACAGCTGCAAACTCACT
-CGTCCATTTGTTGTTGTGTC 	5
---------------------AACGTATGTCGAGCAAACAT 	12
---------------------AACGTATGTCGAGCAAACA 	1

Overlaps with: MNEST024969 MNEST024970 MNEST024971 MNEST024972
Overlaps with miRBase pre-miRNAs: cin-mir-4010
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Ciona intestinalis	GSM343285	AACGTATGTCGAGCAAACATTG	AGTTTGTCGCCATACTTCAC	up	4	2

Secondary structure

TCGTCCATTTGTTGTTGTGTCAACGTATGTCGAGCAAACATTGCATGAGTCATCATGACATGGCAAGTTTGTCGCCATACTTCACCACAGCTGCAAACTCACT
-CGTCCATTTGTTGTTGTGTC 	2
-CGTCCATTTGTTGTTGTGT 	2
---------------------AACGTATGTCGAGCAAACATTGC 	4
---------------------AACGTATGTCGAGCAAACATTG 	201
---------------------AACGTATGTCGAGCAAACATT 	2
---------------------AACGTATGTCGAGCAAACAT 	13
---------------------AACGTATGTCGAGCAAACA 	6
----------------------ACGTATGTCGAGCAAACATTGC 	2
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCAC 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTCA 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTTC 	1
---------------------------------------------------------------CAAGTTTGTCGCCATACTT 	1
----------------------------------------------------------------AAGTTTGTCGCCATACTTCACC 	1

Overlaps with: MNEST024969 MNEST024970 MNEST024971 MNEST024972
Overlaps with miRBase pre-miRNAs: cin-mir-4010
HuntMi prediction: true miRNA