miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: AACTGGCCCGCAAAGTCCCGCT

selected species: Danio rerio



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 AACTGGCCCGCAAAGTCCCGCT CGGGACTTTGGGGGCGAGATGA down 5 0


Secondary structure

GAAAGCATTGTGATTTCAGTGACGGGACTTTGGGGGCGAGATGAGTATTGATCTCTATCCAACTGGCCCGCAAAGTCCCGCTTCTGGGACTCACCCTCACA
---------------------ACGGGACTTTGGGGGCGAGA 	1
----------------------CGGGACTTTGGGGGCGAGATGAGT 	1
----------------------CGGGACTTTGGGGGCGAGATG 	12
----------------------CGGGACTTTGGGGGCGAGAT 	1
----------------------CGGGACTTTGGGGGCGAGA 	2
------------------------------------------------------------AACTGGCCCGCAAAGTCCCGCTT 	3
------------------------------------------------------------AACTGGCCCGCAAAGTCCCGCT 	16
---------------------------------------------------------------TGGCCCGCAAAGTCCCGCTT 	1

Overlaps with: MNEST034344
Overlaps with miRBase pre-miRNAs: dre-mir-193b
HuntMi prediction: true miRNA