miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

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selected mature miRNA sequence: AACTGTGTCTTTTCTGAATAGA

selected species: Mus musculus

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539877-5198	AACTGTGTCTTTTCTGAATAGA	TATTCAGAGAGATAACAGTCAC	down	6	0

Secondary structure

GAACAAATTGTGTGCAGTACAATATTCAGAGAGATAACAGTCACATCTTTTCTAAAGTAACTGTGTCTTTTCTGAATAGAGTAATGTTCACCAAAAACA
---------------------ATATTCAGAGAGATAACAGTCA 	1
---------------------ATATTCAGAGAGATAACAGTC 	1
----------------------TATTCAGAGAGATAACAGTC 	2
----------------------TATTCAGAGAGATAACAGTCA 	43
----------------------TATTCAGAGAGATAACAGTCAC 	33
----------------------TATTCAGAGAGATAACAGTCACA 	3
---------------------------------------------------------TAACTGTGTCTTTTCTGAATAG 	15
---------------------------------------------------------TAACTGTGTCTTTTCTGAATAGA 	37
---------------------------------------------------------TAACTGTGTCTTTTCTGAAT 	1
----------------------------------------------------------AACTGTGTCTTTTCTGAATAGA 	4281
----------------------------------------------------------AACTGTGTCTTTTCTGAAT 	49
----------------------------------------------------------AACTGTGTCTTTTCTGAATAGAGT 	1
----------------------------------------------------------AACTGTGTCTTTTCTGAATAGAG 	12
----------------------------------------------------------AACTGTGTCTTTTCTGAATA 	1116
----------------------------------------------------------AACTGTGTCTTTTCTGAATAG 	925
-----------------------------------------------------------ACTGTGTCTTTTCTGAATAGAG 	1
-----------------------------------------------------------ACTGTGTCTTTTCTGAATA 	14
-----------------------------------------------------------ACTGTGTCTTTTCTGAATAGA 	30
-----------------------------------------------------------ACTGTGTCTTTTCTGAATAG 	7
------------------------------------------------------------CTGTGTCTTTTCTGAATAG 	1

Overlaps with: MNEST032374
Overlaps with miRBase pre-miRNAs: mmu-mir-881
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539878	AACTGTGTCTTTTCTGAATAGA	TATTCAGAGAGATAACAGTCAC	down	6	0

Secondary structure

GAACAAATTGTGTGCAGTACAATATTCAGAGAGATAACAGTCACATCTTTTCTAAAGTAACTGTGTCTTTTCTGAATAGAGTAATGTTCACCAAAAACA
---------------------------------------------------------TAACTGTGTCTTTTCTGAATAGA 	1
----------------------------------------------------------AACTGTGTCTTTTCTGAATAGA 	92
----------------------------------------------------------AACTGTGTCTTTTCTGAATA 	16
----------------------------------------------------------AACTGTGTCTTTTCTGAATAG 	15

Overlaps with: MNEST032374
Overlaps with miRBase pre-miRNAs: mmu-mir-881
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539873	AACTGTGTCTTTTCTGAATAGA	TATTCAGAGAGATAACAGTCAC	down	6	0

Secondary structure

GAACAAATTGTGTGCAGTACAATATTCAGAGAGATAACAGTCACATCTTTTCTAAAGTAACTGTGTCTTTTCTGAATAGAGTAATGTTCACCAAAAACA
----------------------TATTCAGAGAGATAACAGTCAC 	1
----------------------------------------------------------AACTGTGTCTTTTCTGAATAGA 	91
----------------------------------------------------------AACTGTGTCTTTTCTGAATA 	20
----------------------------------------------------------AACTGTGTCTTTTCTGAAT 	1
----------------------------------------------------------AACTGTGTCTTTTCTGAATAG 	29

Overlaps with: MNEST032374
Overlaps with miRBase pre-miRNAs: mmu-mir-881
HuntMi prediction: true miRNA