miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGACGGGAGGAAAGAAGGGAG

selected species: Homo sapiens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM531982 AAGACGGGAGGAAAGAAGGGAG CACTCCTCTCCTCCCGTCTTCT up 3 0


Secondary structure

GGGAGAGGGGGAAGACGGGAGGAAAGAAGGGAGTGGTTCCATCACGCCTCCTCACTCCTCTCCTCCCGTCTTCTCCTCTCCT
-----------AAGACGGGAGGAAAGAAGGGAG 	34
-----------AAGACGGGAGGAAAGAAGGGA 	16
-----------AAGACGGGAGGAAAGAAGG 	9
-----------AAGACGGGAGGAAAGAAGGG 	2
-----------AAGACGGGAGGAAAGAAGGGAGT 	1
------------AGACGGGAGGAAAGAAGGGAGTGG 	3
------------AGACGGGAGGAAAGAAGGGAG 	2
------------AGACGGGAGGAAAGAAGGGAGT 	1
------------AGACGGGAGGAAAGAAGGGA 	1
------------AGACGGGAGGAAAGAAGGGAGTG 	1
----------------------------------------------------CACTCCTCTCCTCCCGTCTTCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531978 AAGACGGGAGGAAAGAAGGGAG CACTCCTCTCCTCCCGTCTTCT up 3 0


Secondary structure

GGGAGAGGGGGAAGACGGGAGGAAAGAAGGGAGTGGTTCCATCACGCCTCCTCACTCCTCTCCTCCCGTCTTCTCCTCTCCT
-----------AAGACGGGAGGAAAGAAGGGAGT 	83
-----------AAGACGGGAGGAAAGAAGGGAG 	530
-----------AAGACGGGAGGAAAGAAGGGA 	214
-----------AAGACGGGAGGAAAGAAGGG 	114
-----------AAGACGGGAGGAAAGAAGG 	80
-----------AAGACGGGAGGAAAGAAGGGAGTGG 	3
-----------AAGACGGGAGGAAAGAAGGGAGTG 	1
------------AGACGGGAGGAAAGAAGGGAGTGG 	34
------------AGACGGGAGGAAAGAAGGGAGT 	29
------------AGACGGGAGGAAAGAAGGGAG 	32
------------AGACGGGAGGAAAGAAGGGA 	12
------------AGACGGGAGGAAAGAAGGG 	10
------------AGACGGGAGGAAAGAAGGGAGTG 	4
------------AGACGGGAGGAAAGAAGGGAGTGGTT 	2
-------------GACGGGAGGAAAGAAGGGAGTGG 	5
-------------GACGGGAGGAAAGAAGGGAG 	2
---------------------------------------------------TCACTCCTCTCCTCCCGTC 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531986-13294 AAGACGGGAGGAAAGAAGGGAG CACTCCTCTCCTCCCGTCTTCT up 3 0


Secondary structure

GGGAGAGGGGGAAGACGGGAGGAAAGAAGGGAGTGGTTCCATCACGCCTCCTCACTCCTCTCCTCCCGTCTTCTCCTCTCCT
-----------AAGACGGGAGGAAAGAAGGGAGT 	304
-----------AAGACGGGAGGAAAGAAGGGAG 	2400
-----------AAGACGGGAGGAAAGAAGGGA 	1225
-----------AAGACGGGAGGAAAGAAGGG 	480
-----------AAGACGGGAGGAAAGAAGG 	229
-----------AAGACGGGAGGAAAGAAGGGAGTGG 	3
-----------AAGACGGGAGGAAAGAAGGGAGTG 	3
------------AGACGGGAGGAAAGAAGGGAGTGG 	40
------------AGACGGGAGGAAAGAAGGGAGT 	30
------------AGACGGGAGGAAAGAAGGGAG 	55
------------AGACGGGAGGAAAGAAGGGA 	33
------------AGACGGGAGGAAAGAAGGGAGTG 	21
------------AGACGGGAGGAAAGAAGGG 	23
------------AGACGGGAGGAAAGAAGGGAGTGGTT 	6
------------AGACGGGAGGAAAGAAGGGAGTGGT 	2
---------------------------------------------------TCACTCCTCTCCTCCCGTCTT 	14
---------------------------------------------------TCACTCCTCTCCTCCCGTCTTC 	9
---------------------------------------------------TCACTCCTCTCCTCCCGTCT 	6
---------------------------------------------------TCACTCCTCTCCTCCCGTC 	3
---------------------------------------------------TCACTCCTCTCCTCCCGTCTTCT 	1
----------------------------------------------------CACTCCTCTCCTCCCGTCTTCT 	30
----------------------------------------------------CACTCCTCTCCTCCCGTCTTC 	18
----------------------------------------------------CACTCCTCTCCTCCCGTCTT 	7
----------------------------------------------------CACTCCTCTCCTCCCGTCT 	8



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531975 AAGACGGGAGGAAAGAAGGGAG CACTCCTCTCCTCCCGTCTTCT up 3 0


Secondary structure

GGGAGAGGGGGAAGACGGGAGGAAAGAAGGGAGTGGTTCCATCACGCCTCCTCACTCCTCTCCTCCCGTCTTCTCCTCTCCT
----------GAAGACGGGAGGAAAGAAGGGA 	1
-----------AAGACGGGAGGAAAGAAGGGAGTGG 	17
-----------AAGACGGGAGGAAAGAAGGGAGT 	616
-----------AAGACGGGAGGAAAGAAGGGAG 	3342
-----------AAGACGGGAGGAAAGAAGGGA 	1643
-----------AAGACGGGAGGAAAGAAGGG 	809
-----------AAGACGGGAGGAAAGAAGG 	301
-----------AAGACGGGAGGAAAGAAGGGAGTG 	5
------------AGACGGGAGGAAAGAAGGGAGTGGTT 	16
------------AGACGGGAGGAAAGAAGGGAGTGGT 	7
------------AGACGGGAGGAAAGAAGGGAGTGG 	128
------------AGACGGGAGGAAAGAAGGGAGTG 	38
------------AGACGGGAGGAAAGAAGGGAGT 	139
------------AGACGGGAGGAAAGAAGGGAG 	173
------------AGACGGGAGGAAAGAAGGGA 	96
------------AGACGGGAGGAAAGAAGGG 	71
-------------GACGGGAGGAAAGAAGGGAG 	3
-------------GACGGGAGGAAAGAAGGGAGT 	2
---------------------------------------------------TCACTCCTCTCCTCCCGTCTTC 	8
---------------------------------------------------TCACTCCTCTCCTCCCGTCTT 	3
---------------------------------------------------TCACTCCTCTCCTCCCGTC 	1
---------------------------------------------------TCACTCCTCTCCTCCCGTCTTCT 	1
----------------------------------------------------CACTCCTCTCCTCCCGTCTTCT 	18
----------------------------------------------------CACTCCTCTCCTCCCGTCT 	1
----------------------------------------------------CACTCCTCTCCTCCCGTCTTC 	1
----------------------------------------------------CACTCCTCTCCTCCCGTCTT 	1
-----------------------------------------------------ACTCCTCTCCTCCCGTCTTC 	1
-----------------------------------------------------ACTCCTCTCCTCCCGTCTTCT 	1



HuntMi prediction: true miRNA