miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AAGCACCACGAGAAGCTGCAGA

selected species: Caenorhabditis elegans



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
------------CGCAGTTTGTTGTGATGTGCTCCA 	15
------------CGCAGTTTGTTGTGATGTGCTCC 	17
------------CGCAGTTTGTTGTGATGTGCTC 	3
------------CGCAGTTTGTTGTGATGTGCT 	2
-------------GCAGTTTGTTGTGATGTGCTCC 	1
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	2674
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	53
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	10
----------------------------------------------------AAGCACCACGAGAAGCTGCAGAT 	4
----------------------------------------------------AAGCACCACGAGAAGCTGC 	2
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	76
-----------------------------------------------------AGCACCACGAGAAGCTGCAGAT 	3
-------------------------------------------------------CACCACGAGAAGCTGCAGATGGA 	1


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
------------CGCAGTTTGTTGTGATGTGCTCCA 	34
------------CGCAGTTTGTTGTGATGTGCTCC 	36
------------CGCAGTTTGTTGTGATGTGCTC 	7
------------CGCAGTTTGTTGTGATGTGCT 	3
------------CGCAGTTTGTTGTGATGTG 	2
------------CGCAGTTTGTTGTGATGTGC 	2
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	3253
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	125
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	30
----------------------------------------------------AAGCACCACGAGAAGCTGC 	7
----------------------------------------------------AAGCACCACGAGAAGCTGCAGAT 	3
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	94
-----------------------------------------------------AGCACCACGAGAAGCTGCAG 	5
-----------------------------------------------------AGCACCACGAGAAGCTGCAGAT 	2
-------------------------------------------------------CACCACGAGAAGCTGCAGA 	5


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
----------------------------------------------------AAGCACCACGAGAAGCTGCAGAT 	4
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	1512
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	59
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	16
----------------------------------------------------AAGCACCACGAGAAGCTGC 	3
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	5
-----------------------------------------------------AGCACCACGAGAAGCTGCAG 	1


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	130
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	3
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	3
----------------------------------------------------AAGCACCACGAGAAGCTGC 	1
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	2


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427297-5679 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	30
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	1
-----------------------------------------------------AGCACCACGAGAAGCTGCAG 	1


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
------------CGCAGTTTGTTGTGATGTG 	1
------------CGCAGTTTGTTGTGATGTGCT 	1
------------CGCAGTTTGTTGTGATGTGCTC 	5
------------CGCAGTTTGTTGTGATGTGC 	1
------------CGCAGTTTGTTGTGATGTGCTCC 	12
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	75
----------------------------------------------------AAGCACCACGAGAAGCTGC 	8
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	1151
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	31
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	14
------------------------------------------------------GCACCACGAGAAGCTGCAGA 	1
-------------------------------------------------------CACCACGAGAAGCTGCAGA 	2


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
------------CGCAGTTTGTTGTGATGTGCTCCA 	1
------------CGCAGTTTGTTGTGATGTGCTC 	8
------------CGCAGTTTGTTGTGATGTGC 	3
------------CGCAGTTTGTTGTGATGTGCTCC 	15
------------CGCAGTTTGTTGTGATGTG 	1
---------------AGTTTGTTGTGATGTGCTCC 	1
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	65
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	996
----------------------------------------------------AAGCACCACGAGAAGCTGC 	4
----------------------------------------------------AAGCACCACGAGAAGCTGCA 	35
-----------------------------------------------------AGCACCACGAGAAGCTGCAGA 	12
-------------------------------------------------------CACCACGAGAAGCTGCAGA 	3


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427301-5681 AAGCACCACGAGAAGCTGCAGA CGCAGTTTGTTGTGATGTGCTCCA down 3 2


Secondary structure

AAGACCACCGTCCGCAGTTTGTTGTGATGTGCTCCAAGCAATCATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAGGTTC
----------------------------------------------------AAGCACCACGAGAAGCTGCAGA 	9
----------------------------------------------------AAGCACCACGAGAAGCTGCAG 	1


Overlaps with: MNEST038286
Overlaps with miRBase pre-miRNAs: cel-mir-49
HuntMi prediction: true miRNA