miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAGCAGCACATAAATACTGGAG

selected species: Danio rerio

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540645	AAGCAGCACATAAATACTGGAG	CCAGTATTGCTGTTCTGCTGTA	up	5	0

Secondary structure

AGATCTGAAGGGAATGTACTAAAGCAGCACATAAATACTGGAGGTGATTGTGGTGTTATCCAGTATTGCTGTTCTGCTGTAGTAAGACCTGTCAGCACT
---------------------AAGCAGCACATAAATACTGGAG 	187
---------------------AAGCAGCACATAAATACTGGA 	45
---------------------AAGCAGCACATAAATACTGG 	1
----------------------AGCAGCACATAAATACTGGAGG 	1
----------------------AGCAGCACATAAATACTGGAG 	2
----------------------AGCAGCACATAAATACTGGA 	1
----------------------------------------------------------TCCAGTATTGCTGTTCTGCTGT 	1
------------------------------------------------------------CAGTATTGCTGTTCTGCTGTA 	11

Overlaps with: MNEST034480
Overlaps with miRBase pre-miRNAs: dre-mir-457b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540643	AAGCAGCACATAAATACTGGAG	CCAGTATTGCTGTTCTGCTGTA	up	5	0

Secondary structure

AGATCTGAAGGGAATGTACTAAAGCAGCACATAAATACTGGAGGTGATTGTGGTGTTATCCAGTATTGCTGTTCTGCTGTAGTAAGACCTGTCAGCACT
---------------------AAGCAGCACATAAATACTGGAG 	26
---------------------AAGCAGCACATAAATACTGGA 	24
----------------------------------------------------------TCCAGTATTGCTGTTCTGCTGT 	6
-----------------------------------------------------------CCAGTATTGCTGTTCTGCTGT 	1

Overlaps with: MNEST034480
Overlaps with miRBase pre-miRNAs: dre-mir-457b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540646	AAGCAGCACATAAATACTGGAG	CCAGTATTGCTGTTCTGCTGTA	up	5	0

Secondary structure

AGATCTGAAGGGAATGTACTAAAGCAGCACATAAATACTGGAGGTGATTGTGGTGTTATCCAGTATTGCTGTTCTGCTGTAGTAAGACCTGTCAGCACT
---------------------AAGCAGCACATAAATACTGGA 	224
---------------------AAGCAGCACATAAATACTGGAG 	2419
---------------------AAGCAGCACATAAATACTGG 	7
----------------------AGCAGCACATAAATACTGGAGG 	1
----------------------AGCAGCACATAAATACTGGAG 	1
-----------------------GCAGCACATAAATACTGGA 	1
-----------------------------------------AGGTGATTGTGGTGTTATCC 	1
----------------------------------------------------------TCCAGTATTGCTGTTCTGCTGT 	18
----------------------------------------------------------TCCAGTATTGCTGTTCTGCTG 	1
-----------------------------------------------------------CCAGTATTGCTGTTCTGCTGTA 	10
------------------------------------------------------------CAGTATTGCTGTTCTGCTGTA 	22
------------------------------------------------------------CAGTATTGCTGTTCTGCTGT 	2

Overlaps with: MNEST034480
Overlaps with miRBase pre-miRNAs: dre-mir-457b
HuntMi prediction: true miRNA