miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCAGCACATCAATATTGGCA

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 AAGCAGCACATCAATATTGGCA CCAGTATGGTTTGTGCTGCTCCC up 4 1


Secondary structure

ATGCCTCAGTGTGCCTGACAGAAGCAGCACATCAATATTGGCAGCTGCCCTCTCTCTGGGTTGCCAGTATGGTTTGTGCTGCTCCCGTCAGACAGACACACTCA
---------------------AAGCAGCACATCAATATTGGCAGC 	1
---------------------AAGCAGCACATCAATATTGGCAG 	1
---------------------AAGCAGCACATCAATATTGGCA 	167
---------------------AAGCAGCACATCAATATTGGC 	24
---------------------AAGCAGCACATCAATATTG 	1
----------------------AGCAGCACATCAATATTGGCA 	1
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCCC 	2

Overlaps with: MNEST034479
Overlaps with miRBase pre-miRNAs: dre-mir-457a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 AAGCAGCACATCAATATTGGCA CCAGTATGGTTTGTGCTGCTCCC up 4 1


Secondary structure

ATGCCTCAGTGTGCCTGACAGAAGCAGCACATCAATATTGGCAGCTGCCCTCTCTCTGGGTTGCCAGTATGGTTTGTGCTGCTCCCGTCAGACAGACACACTCA
---------------------AAGCAGCACATCAATATTGGCA 	494
---------------------AAGCAGCACATCAATATTGGC 	41
---------------------AAGCAGCACATCAATATTGG 	5
---------------------AAGCAGCACATCAATATTG 	2
----------------------AGCAGCACATCAATATTGGCA 	1
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCCC 	3

Overlaps with: MNEST034479
Overlaps with miRBase pre-miRNAs: dre-mir-457a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 AAGCAGCACATCAATATTGGCA CCAGTATGGTTTGTGCTGCTCCC up 4 1


Secondary structure

ATGCCTCAGTGTGCCTGACAGAAGCAGCACATCAATATTGGCAGCTGCCCTCTCTCTGGGTTGCCAGTATGGTTTGTGCTGCTCCCGTCAGACAGACACACTCA
---------------------AAGCAGCACATCAATATTGGCAGCTG 	1
---------------------AAGCAGCACATCAATATTGGCAGCT 	7
---------------------AAGCAGCACATCAATATTGGCAGC 	8
---------------------AAGCAGCACATCAATATTGGCAG 	16
---------------------AAGCAGCACATCAATATTGGCA 	1567
---------------------AAGCAGCACATCAATATTGGC 	148
---------------------AAGCAGCACATCAATATTGG 	7
----------------------AGCAGCACATCAATATTGGCA 	14
----------------------AGCAGCACATCAATATTGG 	2
-----------------------GCAGCACATCAATATTGGCA 	1
------------------------CAGCACATCAATATTGGCA 	1
--------------------------------------------------TCTCTCTGGGTTGCCAGTATGGTT 	1
--------------------------------------------------------TGGGTTGCCAGTATGGTTTGTGC 	2
------------------------------------------------------------TTGCCAGTATGGTTTGTGCTGCTCCC 	1
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCCC 	13
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCC 	5
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTC 	7
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCT 	1
-----------------------------------------------------------------AGTATGGTTTGTGCTGCTCC 	1

Overlaps with: MNEST034479
Overlaps with miRBase pre-miRNAs: dre-mir-457a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 AAGCAGCACATCAATATTGGCA CCAGTATGGTTTGTGCTGCTCCC up 4 1


Secondary structure

ATGCCTCAGTGTGCCTGACAGAAGCAGCACATCAATATTGGCAGCTGCCCTCTCTCTGGGTTGCCAGTATGGTTTGTGCTGCTCCCGTCAGACAGACACACTCA
---------------------AAGCAGCACATCAATATTGGCA 	172
---------------------AAGCAGCACATCAATATTGGC 	12
----------------------AGCAGCACATCAATATTGGCA 	3
--------------------------------------------------------------GCCAGTATGGTTTGTGCTGCTC 	1
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCCC 	1
----------------------------------------------------------------CAGTATGGTTTGTGCTGCTCCC 	1

Overlaps with: MNEST034479
Overlaps with miRBase pre-miRNAs: dre-mir-457a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 AAGCAGCACATCAATATTGGCA CCAGTATGGTTTGTGCTGCTCCC up 4 1


Secondary structure

ATGCCTCAGTGTGCCTGACAGAAGCAGCACATCAATATTGGCAGCTGCCCTCTCTCTGGGTTGCCAGTATGGTTTGTGCTGCTCCCGTCAGACAGACACACTCA
---------------------AAGCAGCACATCAATATTGGCA 	3285
---------------------AAGCAGCACATCAATATTGGC 	143
---------------------AAGCAGCACATCAATATTGG 	12
----------------------AGCAGCACATCAATATTGGCA 	9
-----------------------------------------------------------GTTGCCAGTATGGTTTGTGCTG 	1
-------------------------------------------------------------TGCCAGTATGGTTTGTGCTGCT 	2
-------------------------------------------------------------TGCCAGTATGGTTTGTGCTGCTC 	1
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCC 	3
---------------------------------------------------------------CCAGTATGGTTTGTGCTGCTCCC 	19

Overlaps with: MNEST034479
Overlaps with miRBase pre-miRNAs: dre-mir-457a
HuntMi prediction: true miRNA