miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCCAAGGATGACTTGCCGA

selected species: Glycine max



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 AAGCCAAGGATGACTTGCCGA GGCAGGTCATCCTCTGGCTATA up 2 1


Secondary structure

TTGGTCTAAGAGTCTTTCATGGAGAGGTTGAAAGTGGGATGAAGCCAAGGATGACTTGCCGACATTAATTTGCCATTAAGCTAACGAGTTAGGTAGAATCATTTGTTAGATTTTCCCGGCAGGTCATCCTCTGGCTATATTTGGCTTTCTTCCTCTCATGTGAGACTCTAATGACCT
-----------------------------------------AAGCCAAGGATGACTTGCCGA 	10

Overlaps with: MNEST040451 MNEST048563
Overlaps with miRBase pre-miRNAs: gma-MIR169c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 AAGCCAAGGATGACTTGCCGA GGCAGGTTATCCTGTGGCTACA up 2 1


Secondary structure

CACAAGCTTTTGGTCTCGGAGTCTTTCATGCAGAGGTTGAAAGTGGAAATGAAGCCAAGGATGACTTGCCGACATTAATTTGCTATGATGCTAGAGAGCTAGCTAGCTTCATTTGCTAAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTTCTCTAATGTAAGATTCCGGAGACCGTATCATATGG
---------------------------------------------------AAGCCAAGGATGACTTGCCGA 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 AAGCCAAGGATGACTTGCCGA GGCAGGTCATCCTCTGGCTATA up 2 1


Secondary structure

TTGGTCTAAGAGTCTTTCATGGAGAGGTTGAAAGTGGGATGAAGCCAAGGATGACTTGCCGACATTAATTTGCCATTAAGCTAACGAGTTAGGTAGAATCATTTGTTAGATTTTCCCGGCAGGTCATCCTCTGGCTATATTTGGCTTTCTTCCTCTCATGTGAGACTCTAATGACCT
-----------------------------------------AAGCCAAGGATGACTTGCCGA 	18

Overlaps with: MNEST040451 MNEST048563
Overlaps with miRBase pre-miRNAs: gma-MIR169c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543394 AAGCCAAGGATGACTTGCCGA GGCAGGTTATCCTGTGGCTACA up 2 1


Secondary structure

CACAAGCTTTTGGTCTCGGAGTCTTTCATGCAGAGGTTGAAAGTGGAAATGAAGCCAAGGATGACTTGCCGACATTAATTTGCTATGATGCTAGAGAGCTAGCTAGCTTCATTTGCTAAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTTCTCTAATGTAAGATTCCGGAGACCGTATCATATGG
---------------------------------------------------AAGCCAAGGATGACTTGCCGA 	18


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543393 AAGCCAAGGATGACTTGCCGA GGCAGGTCATCCTCTGGCTATA up 2 1


Secondary structure

TTGGTCTAAGAGTCTTTCATGGAGAGGTTGAAAGTGGGATGAAGCCAAGGATGACTTGCCGACATTAATTTGCCATTAAGCTAACGAGTTAGGTAGAATCATTTGTTAGATTTTCCCGGCAGGTCATCCTCTGGCTATATTTGGCTTTCTTCCTCTCATGTGAGACTCTAATGACCT
-----------------------------------------AAGCCAAGGATGACTTGCCGA 	20
---------------------------------------------------------------------------------------------------------------------GGCAGGTCATCCTCTGGCTATA 	5

Overlaps with: MNEST040451 MNEST048563
Overlaps with miRBase pre-miRNAs: gma-MIR169c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543393 AAGCCAAGGATGACTTGCCGA GGCAGGTTATCCTGTGGCTACA up 2 1


Secondary structure

CACAAGCTTTTGGTCTCGGAGTCTTTCATGCAGAGGTTGAAAGTGGAAATGAAGCCAAGGATGACTTGCCGACATTAATTTGCTATGATGCTAGAGAGCTAGCTAGCTTCATTTGCTAAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTTCTCTAATGTAAGATTCCGGAGACCGTATCATATGG
---------------------------------------------------AAGCCAAGGATGACTTGCCGA 	20


HuntMi prediction: true miRNA