miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AAGCCCTTACCCCAAAAAGCAT

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539850 AAGCCCTTACCCCAAAAAGCAT CTTTTTGCGGTCTGGGCTTGC down 3 1


Secondary structure

GGCGGCGACGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCAC
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCTGTA 	1
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCT 	76
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTG 	1215
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTT 	557
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCTG 	1
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGC 	331
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTG 	2
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGC 	1
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGC 	2
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGCA 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCGC 	6
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCG 	25
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAG 	25
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	2435
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATT 	68
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCA 	304
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	127
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCATT 	6
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCA 	2
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGC 	1
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCAT 	15


Overlaps with: MNEST031854 MNEST031855
Overlaps with miRBase pre-miRNAs: eca-mir-129b mmu-mir-129-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527277-2110 AAGCCCTTACCCCAAAAAGCAT CTTTTTGCGGTCTGGGCTTGC down 3 1


Secondary structure

GGCGGCGACGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCAC
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTG 	102
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCTG 	5
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCTGT 	2
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTT 	15
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGC 	2976
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCT 	41
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTGCT 	3
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTGCTG 	2
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTGCTGT 	1
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTGC 	32
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTG 	3
-----------------------------------------------------------------------------------TGTACATAACTCAATAGCCGG 	8
-----------------------------------------------------------------------------------TGTACATAACTCAATAGCCGGAAGC 	1
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGC 	13
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGCAT 	6
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGCA 	2
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGCAT 	2
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGC 	9
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGCA 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCA 	369
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	3490
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAG 	51
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATT 	101
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	1847
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGC 	18
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCAT 	35
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCATT 	7
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCA 	6
----------------------------------------------------------------------------------------------------------GCCCTTACCCCAAAAAGCAT 	1


Overlaps with: MNEST031854 MNEST031855
Overlaps with miRBase pre-miRNAs: eca-mir-129b mmu-mir-129-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539848 AAGCCCTTACCCCAAAAAGCAT CTTTTTGCGGTCTGGGCTTGC down 3 1


Secondary structure

GGCGGCGACGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCAC
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTG 	4
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTT 	2
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCT 	3
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGC 	6
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGCA 	1
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAG 	1
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	26
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCA 	3


Overlaps with: MNEST031854 MNEST031855
Overlaps with miRBase pre-miRNAs: eca-mir-129b mmu-mir-129-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539867 AAGCCCTTACCCCAAAAAGCAT CTTTTTGCGGTCTGGGCTTGC down 3 1


Secondary structure

GGCGGCGACGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCAC
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCT 	45
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGC 	470
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTG 	268
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTT 	42
---------------------------------------------------------------TTTTTGCGGTCTGGGCTTGC 	1
-----------------------------------------------------------------------------------TGTACATAACTCAATAGCCGG 	1
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGCAT 	2
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGC 	1
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGCA 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCGC 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCG 	25
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTC 	4
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATT 	44
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	1256
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCA 	93
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAG 	8
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	22
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCATT 	9
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCAT 	8


Overlaps with: MNEST031854 MNEST031855
Overlaps with miRBase pre-miRNAs: eca-mir-129b mmu-mir-129-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539854 AAGCCCTTACCCCAAAAAGCAT CTTTTTGCGGTCTGGGCTTGC down 3 1


Secondary structure

GGCGGCGACGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCAC
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGCT 	5
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTGC 	77
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTTG 	28
--------------------------------------------------------------CTTTTTGCGGTCTGGGCTT 	19
------------------------------------------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGCA 	1
-------------------------------------------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGCA 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCGC 	2
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATTCG 	12
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCATT 	11
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	248
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCA 	30
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	10
--------------------------------------------------------------------------------------------------------AAGCCCTTACCCCAAAAAG 	1
---------------------------------------------------------------------------------------------------------AGCCCTTACCCCAAAAAGCAT 	1


Overlaps with: MNEST031854 MNEST031855
Overlaps with miRBase pre-miRNAs: eca-mir-129b mmu-mir-129-2
HuntMi prediction: true miRNA