miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAGCCGGGCCGTAGTGGCGCA

selected species: Mus musculus

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539835	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	54
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	19
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	5
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAG 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	3
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	2

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539849	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	16
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	4

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539848	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
-------------------------------------------------------------------------------------------------------------------------------------GTAAGCCGGGCCGTAGTGGCGCA 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	321
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	73
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	28
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGCCT 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGCC 	3
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAG 	6
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	43
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGC 	5
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	18
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAGCC 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAGC 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAG 	5
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGC 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	9
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCAAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAA 	2
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGCC 	3
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGC 	7

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539864	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	10
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539847	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	8
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	2
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	2
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	3
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCA 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAA 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539853	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	17
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGC 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539871	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAG 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	2
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	5

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539873	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	3
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	16
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	3
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAGCC 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539875	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	13
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	3
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	4
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	3
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539876	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGCC 	4
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	8
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	112
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	14
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	14
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAGC 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	11
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	4
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTTTAATTTCAGTACTTGG 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539854	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	5
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	14
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	2
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAGCC 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCAAGCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------GCCGGGCCGTAGTGGCGCAAG 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGC 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539874	AAGCCGGGCCGTAGTGGCGCA	CGCCACCATGCCTGGCTCTT	down	2	1

Secondary structure

ACTCAGAAATCCTGCCTCCCAAGAGCTGGGATTAAAGGCTTGCGCCACCATGCCTGGCTCTTTTGTTTTGTTTTATTGTGATCCTAGATCCCATCATGTGAACATCTAGATTTAGCATCACAATCAGGAACCTGTAAGCCGGGCCGTAGTGGCGCAAGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCTGGCGG
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAAGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCAA 	3
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGCA 	40
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCGC 	17
---------------------------------------------------------------------------------------------------------------------------------------AAGCCGGGCCGTAGTGGCG 	5
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAA 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCA 	2
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGCAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------AGCCGGGCCGTAGTGGCGC 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGCC 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGGCCGTAGTGGCGCAAGC 	1

Overlaps with: MNEST032470
Overlaps with miRBase pre-miRNAs: mmu-mir-1965
HuntMi prediction: true miRNA