miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCTCAGGAGGGATAGCACC

selected species: Glycine max



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGGGTTGCAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTATATATATAAC
-------------------------------AAGCTCAGGAGGGATAGCACC 	14

Overlaps with: MNEST040469 MNEST048575
Overlaps with miRBase pre-miRNAs: gma-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGTTGCAGAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCATGATACTGATGATGTTCATAGCAGTACAAACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTTTATAACACCA
-------------------------------AAGCTCAGGAGGGATAGCACC 	14


Overlaps with miRBase pre-miRNAs: gma-MIR390d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGGGTTGCAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTATATATATAAC
-------------------------------AAGCTCAGGAGGGATAGCACC 	7

Overlaps with: MNEST040469 MNEST048575
Overlaps with miRBase pre-miRNAs: gma-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543394 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGTTGCAGAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCATGATACTGATGATGTTCATAGCAGTACAAACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTTTATAACACCA
-------------------------------AAGCTCAGGAGGGATAGCACC 	7


Overlaps with miRBase pre-miRNAs: gma-MIR390d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543393 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGGGTTGCAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTATATATATAAC
-------------------------------AAGCTCAGGAGGGATAGCACC 	17

Overlaps with: MNEST040469 MNEST048575
Overlaps with miRBase pre-miRNAs: gma-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543393 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGTTGCAGAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCATGATACTGATGATGTTCATAGCAGTACAAACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTTTATAACACCA
-------------------------------AAGCTCAGGAGGGATAGCACC 	17


Overlaps with miRBase pre-miRNAs: gma-MIR390d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543395 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGGGTTGCAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTATATATATAAC
-------------------------------AAGCTCAGGAGGGATAGCACC 	459
-------------------------------AAGCTCAGGAGGGATAGCAC 	6

Overlaps with: MNEST040469 MNEST048575
Overlaps with miRBase pre-miRNAs: gma-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543395 AAGCTCAGGAGGGATAGCACC CGCTATCTATCTTGAGCTTCA up 2 0


Secondary structure

CGGTTGCAGAGAGAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCACCATGATACTGATGATGTTCATAGCAGTACAAACTTGGCGCTATCTATCTTGAGCTTCATGGCTTCTTCATACTGTTTATAACACCA
-------------------------------AAGCTCAGGAGGGATAGCACCA 	9
-------------------------------AAGCTCAGGAGGGATAGCACC 	459
-------------------------------AAGCTCAGGAGGGATAGCAC 	6


Overlaps with miRBase pre-miRNAs: gma-MIR390d
HuntMi prediction: true miRNA