miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCTCAGGAGGGATAGCGCC

selected species: Arabidopsis thaliana



20 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
---------------------------TGTAAAGCTCAGGAGGGATAGCGC 	1
---------------------------TGTAAAGCTCAGGAGGGATAG 	3
----------------------------GTAAAGCTCAGGAGGGATAGCGC 	2
------------------------------AAAGCTCAGGAGGGATAGCGCC 	5
------------------------------AAAGCTCAGGAGGGATAGCGC 	366
------------------------------AAAGCTCAGGAGGGATAGCG 	8
------------------------------AAAGCTCAGGAGGGATAGC 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCATG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	28
-------------------------------AAGCTCAGGAGGGATAGCGCC 	7219
-------------------------------AAGCTCAGGAGGGATAGCGC 	1389
-------------------------------AAGCTCAGGAGGGATAGCG 	287
--------------------------------AGCTCAGGAGGGATAGCGCCA 	18
--------------------------------AGCTCAGGAGGGATAGCGCC 	27
--------------------------------AGCTCAGGAGGGATAGCGC 	23
----------------------------------CTCAGGAGGGATAGCGCCATG 	1
--------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	22
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	3
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCAT 	1
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	2


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------AGCTATAAAGCTCAGGAGGGA 	1
--------------------AAAGCTCAGGAGGGATAGCGCC 	5
--------------------AAAGCTCAGGAGGGATAGCGC 	366
--------------------AAAGCTCAGGAGGGATAGCG 	8
--------------------AAAGCTCAGGAGGGATAGC 	2
---------------------AAGCTCAGGAGGGATAGCGCCATG 	2
---------------------AAGCTCAGGAGGGATAGCGCCA 	28
---------------------AAGCTCAGGAGGGATAGCGCC 	7219
---------------------AAGCTCAGGAGGGATAGCGC 	1389
---------------------AAGCTCAGGAGGGATAGCG 	287
----------------------AGCTCAGGAGGGATAGCGCCA 	18
----------------------AGCTCAGGAGGGATAGCGCC 	27
----------------------AGCTCAGGAGGGATAGCGC 	23
------------------------CTCAGGAGGGATAGCGCCATGG 	1
------------------------CTCAGGAGGGATAGCGCCATG 	1
-------------------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	1
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	1


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM424847-4989 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
------------------------------AAAGCTCAGGAGGGATAGCGCC 	12
------------------------------AAAGCTCAGGAGGGATAGCGC 	4
-------------------------------AAGCTCAGGAGGGATAGCGCCATG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	8
-------------------------------AAGCTCAGGAGGGATAGCGCC 	1652
-------------------------------AAGCTCAGGAGGGATAGCGC 	12
-------------------------------AAGCTCAGGAGGGATAGCG 	5
--------------------------------AGCTCAGGAGGGATAGCGCCATG 	1
--------------------------------AGCTCAGGAGGGATAGCGCCA 	13
--------------------------------AGCTCAGGAGGGATAGCGCC 	20
--------------------------------AGCTCAGGAGGGATAGCGC 	1
----------------------------------CTCAGGAGGGATAGCGCCATG 	5
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	7
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	1


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM424847-4989 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGCC 	12
--------------------AAAGCTCAGGAGGGATAGCGC 	4
---------------------AAGCTCAGGAGGGATAGCGCCATG 	2
---------------------AAGCTCAGGAGGGATAGCGCCA 	8
---------------------AAGCTCAGGAGGGATAGCGCC 	1652
---------------------AAGCTCAGGAGGGATAGCGC 	12
---------------------AAGCTCAGGAGGGATAGCG 	5
----------------------AGCTCAGGAGGGATAGCGCCATG 	1
----------------------AGCTCAGGAGGGATAGCGCCA 	13
----------------------AGCTCAGGAGGGATAGCGCC 	20
----------------------AGCTCAGGAGGGATAGCGC 	1
------------------------CTCAGGAGGGATAGCGCCATG 	5


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM415785 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
---------------------------TGTAAAGCTCAGGAGGGATAGCGC 	1
------------------------------AAAGCTCAGGAGGGATAGCGCC 	55
------------------------------AAAGCTCAGGAGGGATAGCGC 	22
------------------------------AAAGCTCAGGAGGGATAGCG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	3
-------------------------------AAGCTCAGGAGGGATAGCGCC 	8850
-------------------------------AAGCTCAGGAGGGATAGCGC 	74
-------------------------------AAGCTCAGGAGGGATAGCG 	10
--------------------------------AGCTCAGGAGGGATAGCGCCA 	8
--------------------------------AGCTCAGGAGGGATAGCGCC 	124
--------------------------------AGCTCAGGAGGGATAGCGC 	7
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	12
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	8
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCAT 	1


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM415785 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
------------------ATAAAGCTCAGGAGGGATAGCGCC 	1
--------------------AAAGCTCAGGAGGGATAGCGCC 	55
--------------------AAAGCTCAGGAGGGATAGCGC 	22
--------------------AAAGCTCAGGAGGGATAGCG 	2
---------------------AAGCTCAGGAGGGATAGCGCCA 	3
---------------------AAGCTCAGGAGGGATAGCGCC 	8850
---------------------AAGCTCAGGAGGGATAGCGC 	74
---------------------AAGCTCAGGAGGGATAGCG 	10
----------------------AGCTCAGGAGGGATAGCGCCA 	8
----------------------AGCTCAGGAGGGATAGCGCC 	124
----------------------AGCTCAGGAGGGATAGCGC 	7
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	6


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM366870 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
------------------------------AAAGCTCAGGAGGGATAGCGC 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	238
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
--------------------------------AGCTCAGGAGGGATAGCGCCA 	3
--------------------------------AGCTCAGGAGGGATAGCGCC 	5
--------------------------------AGCTCAGGAGGGATAGCGC 	1
--------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	52
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	9
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	72
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTC 	2
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	1


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM366870 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGC 	2
---------------------AAGCTCAGGAGGGATAGCGCCA 	2
---------------------AAGCTCAGGAGGGATAGCGCC 	238
---------------------AAGCTCAGGAGGGATAGCGC 	2
----------------------AGCTCAGGAGGGATAGCGCCA 	3
----------------------AGCTCAGGAGGGATAGCGCC 	5
----------------------AGCTCAGGAGGGATAGCGC 	1
-------------------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	1
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTC 	5
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCCA 	4
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	13
-----------------------------------------------------------------------------------------------GCTATCCATCCTGAGTTCC 	10


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366869 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
-------------------------------AAGCTCAGGAGGGATAGCGCC 	36
--------------------------------AGCTCAGGAGGGATAGCGCCA 	2
--------------------------------AGCTCAGGAGGGATAGCGCC 	2
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	5
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	3
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	1


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366869 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
---------------------AAGCTCAGGAGGGATAGCGCC 	36
----------------------AGCTCAGGAGGGATAGCGCCA 	2
----------------------AGCTCAGGAGGGATAGCGCC 	2
-------------------------------------------------------------------------------ATGTATATCTGTTGGCGCTATCCA 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	1
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	10
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTC 	3
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCCA 	2
-----------------------------------------------------------------------------------------------GCTATCCATCCTGAGTTCC 	4


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM366866 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
---------------------------TGTAAAGCTCAGGAGGGATAGCGCC 	1
------------------------------AAAGCTCAGGAGGGATAGCGC 	6
-------------------------------AAGCTCAGGAGGGATAGCGC 	24
-------------------------------AAGCTCAGGAGGGATAGCGCCATG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	772
--------------------------------AGCTCAGGAGGGATAGCGCC 	2
---------------------------------GCTCAGGAGGGATAGCGCC 	1
------------------------------------CAGGAGGGATAGCGCCATGATGA 	1
--------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	4
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	6
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	193
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	113
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	7
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTC 	3
-------------------------------------------------------------------------------------CTATCCATCCTGAGTTTCA 	2


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM366866 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGC 	6
---------------------AAGCTCAGGAGGGATAGCGC 	24
---------------------AAGCTCAGGAGGGATAGCGCCATG 	1
---------------------AAGCTCAGGAGGGATAGCGCCA 	1
---------------------AAGCTCAGGAGGGATAGCGCC 	772
----------------------AGCTCAGGAGGGATAGCGCC 	2
-----------------------GCTCAGGAGGGATAGCGCC 	1
-------------------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTT 	4
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	2
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTC 	1
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	9
-----------------------------------------------------------------------------------------------GCTATCCATCCTGAGTTCC 	2


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM424848-4990 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
---------------------------TGTAAAGCTCAGGAGGGATAG 	2
------------------------------AAAGCTCAGGAGGGATAGCGCC 	22
------------------------------AAAGCTCAGGAGGGATAGCGC 	7
-------------------------------AAGCTCAGGAGGGATAGCGCCATG 	6
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	16
-------------------------------AAGCTCAGGAGGGATAGCGCC 	3124
-------------------------------AAGCTCAGGAGGGATAGCGC 	18
-------------------------------AAGCTCAGGAGGGATAGCG 	12
--------------------------------AGCTCAGGAGGGATAGCGCCA 	8
--------------------------------AGCTCAGGAGGGATAGCGCC 	21
---------------------------------GCTCAGGAGGGATAGCGCC 	1
----------------------------------CTCAGGAGGGATAGCGCCATG 	2
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	12
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	5
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	2


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM424848-4990 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGCC 	22
--------------------AAAGCTCAGGAGGGATAGCGC 	7
---------------------AAGCTCAGGAGGGATAGCGCCATG 	6
---------------------AAGCTCAGGAGGGATAGCGCCA 	16
---------------------AAGCTCAGGAGGGATAGCGCC 	3124
---------------------AAGCTCAGGAGGGATAGCGC 	18
---------------------AAGCTCAGGAGGGATAGCG 	12
----------------------AGCTCAGGAGGGATAGCGCCA 	8
----------------------AGCTCAGGAGGGATAGCGCC 	21
-----------------------GCTCAGGAGGGATAGCGCC 	1
------------------------CTCAGGAGGGATAGCGCCATG 	2


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM304283 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
------------------------------AAAGCTCAGGAGGGATAGCGC 	7
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	536
-------------------------------AAGCTCAGGAGGGATAGCGC 	12
-------------------------------AAGCTCAGGAGGGATAGCG 	3
--------------------------------AGCTCAGGAGGGATAGCGCCA 	8
--------------------------------AGCTCAGGAGGGATAGCGCC 	1
----------------------------------CTCAGGAGGGATAGCGCCATG 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	1


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM304283 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGC 	7
---------------------AAGCTCAGGAGGGATAGCGCCA 	2
---------------------AAGCTCAGGAGGGATAGCGCC 	536
---------------------AAGCTCAGGAGGGATAGCGC 	12
---------------------AAGCTCAGGAGGGATAGCG 	3
----------------------AGCTCAGGAGGGATAGCGCCA 	8
----------------------AGCTCAGGAGGGATAGCGCC 	1
------------------------CTCAGGAGGGATAGCGCCATG 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	1


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM304285 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
------------------------------AAAGCTCAGGAGGGATAGCGCC 	5
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	3
-------------------------------AAGCTCAGGAGGGATAGCGCC 	462
-------------------------------AAGCTCAGGAGGGATAGCGC 	41
-------------------------------AAGCTCAGGAGGGATAGCG 	1
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	11
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	7
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	2


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Arabidopsis thaliana GSM304285 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGCC 	5
---------------------AAGCTCAGGAGGGATAGCGCCA 	3
---------------------AAGCTCAGGAGGGATAGCGCC 	462
---------------------AAGCTCAGGAGGGATAGCGC 	41
---------------------AAGCTCAGGAGGGATAGCG 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTC 	2
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCCA 	8
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	19
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTC 	6


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Arabidopsis thaliana GSM518432-13544 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA up 1 0


Secondary structure

CCCAAAAAAACAAAGTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTTCATTGGCTCTTCTTACTACAATGAAAAAGG
------------------------------AAAGCTCAGGAGGGATAGCGC 	5
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	837
-------------------------------AAGCTCAGGAGGGATAGCGC 	8
--------------------------------AGCTCAGGAGGGATAGCGCCA 	11
--------------------------------AGCTCAGGAGGGATAGCGCC 	15
--------------------------------------------------------------------------------TGGCGCTATCCATCCTGAGTTT 	3
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	3
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	271
-----------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	188
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCAT 	2
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCA 	1
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTCATT 	2
------------------------------------------------------------------------------------GCTATCCATCCTGAGTTTC 	4


Overlaps with: MNEST047211
Overlaps with miRBase pre-miRNAs: ath-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Arabidopsis thaliana GSM518432-13544 AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTCCA up 2 0


Secondary structure

AGTAGTAGAGAAATAGCTATAAAGCTCAGGAGGGATAGCGCCATGGCTCACCAGTGCTGTATGTTTTGTATATGCGTACATGTATATCTGTTGGCGCTATCCATCCTGAGTTCCATAGCTTCTTCTTGCTTAT
--------------------AAAGCTCAGGAGGGATAGCGC 	5
---------------------AAGCTCAGGAGGGATAGCGCCA 	2
---------------------AAGCTCAGGAGGGATAGCGCC 	837
---------------------AAGCTCAGGAGGGATAGCGC 	8
----------------------AGCTCAGGAGGGATAGCGCCA 	11
----------------------AGCTCAGGAGGGATAGCGCC 	15
------------------------------------------------------------------------------------------TTGGCGCTATCCATCCTGAGTTCC 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTC 	1
---------------------------------------------------------------------------------------------GCGCTATCCATCCTGAGTTCC 	9
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTC 	7
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCCA 	13
----------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTCC 	57
-----------------------------------------------------------------------------------------------GCTATCCATCCTGAGTTCC 	26


Overlaps with: MNEST040073 MNEST046996
Overlaps with miRBase pre-miRNAs: ath-MIR390b
HuntMi prediction: true miRNA