miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAGCTCAGGAGGGATAGCGCC

selected species: Glycine max

25 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACAACACTCATGATTTTATATCATAATATATTTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACGGGA
---------------------AAGCTCAGGAGGGATAGCGCC 	999
---------------------AAGCTCAGGAGGGATAGCGC 	21
----------------------AGCTCAGGAGGGATAGCGCC 	217

Overlaps with miRBase pre-miRNAs: gma-MIR390f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

TTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCTTCACAC
---------------------AAGCTCAGGAGGGATAGCGCC 	999
---------------------AAGCTCAGGAGGGATAGCGC 	21
----------------------AGCTCAGGAGGGATAGCGCC 	217

Overlaps with: MNEST040467 MNEST040468
Overlaps with miRBase pre-miRNAs: gma-MIR390a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543396	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

GCTCTTGTTTTTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTCTTCTCCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCCACACACAATGGAAGAA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	999
-------------------------------AAGCTCAGGAGGGATAGCGC 	21
--------------------------------AGCTCAGGAGGGATAGCGCC 	217

Overlaps with miRBase pre-miRNAs: gma-MIR390c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543396	AAGCTCAGGAGGGATAGCGCC	CGCTACCCATCCTGAGTTTCA	up	1	2

Secondary structure

TTCCTACTTTTTCAGTGTGGAAGAATTTGTAAAGCTCAGGAGGGATAGCGCCATGGAAGGTCTTTCTACTAATTTGCTCTATCATGGGTGCTTTGGTTTCGATCGATCTTCTCTAGCGCTACCCATCCTGAGTTTCATGGTTTCTTCATACTTTTCATAGCTTCA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	999
-------------------------------AAGCTCAGGAGGGATAGCGC 	21
--------------------------------AGCTCAGGAGGGATAGCGCC 	217

Overlaps with miRBase pre-miRNAs: gma-MIR390e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543396	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACGACACTCATGATTTTCACATCATAGTGTATTTGGCGCTATCTATCCTGAGTTTCACGGGTTTTTCTTACTGTA
---------------------AAGCTCAGGAGGGATAGCGCC 	999
---------------------AAGCTCAGGAGGGATAGCGC 	21
----------------------AGCTCAGGAGGGATAGCGCC 	217

Overlaps with miRBase pre-miRNAs: gma-MIR390g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM852280	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACAACACTCATGATTTTATATCATAATATATTTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACGGGA
--------AGAAGAATCTGTAAAGCTCAGGAG 	1
---------GAAGAATCTGTAAAGCTCAGGAGG 	1
-----------AGAATCTGTAAAGCTCAGGAGGGA 	1
---------------------AAGCTCAGGAGGGATAGCGCC 	430
---------------------AAGCTCAGGAGGGATAGCGC 	5
----------------------AGCTCAGGAGGGATAGCGCC 	71
----------------------AGCTCAGGAGGGATAGCGCCACA 	1
-----------------------GCTCAGGAGGGATAGCGCCA 	2

Overlaps with miRBase pre-miRNAs: gma-MIR390f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM852280	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

TTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCTTCACAC
---------GAAGAATCTGTAAAGCTCAGGAGG 	1
-----------AGAATCTGTAAAGCTCAGGAGGGA 	1
---------------------AAGCTCAGGAGGGATAGCGCC 	430
---------------------AAGCTCAGGAGGGATAGCGC 	5
----------------------AGCTCAGGAGGGATAGCGCC 	71
-----------------------GCTCAGGAGGGATAGCGCCA 	2
------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	5

Overlaps with: MNEST040467 MNEST040468
Overlaps with miRBase pre-miRNAs: gma-MIR390a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM852280	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

GCTCTTGTTTTTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTCTTCTCCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCCACACACAATGGAAGAA
-------------------GAAGAATCTGTAAAGCTCAGGAGG 	1
---------------------AGAATCTGTAAAGCTCAGGAGGGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	430
-------------------------------AAGCTCAGGAGGGATAGCGC 	5
--------------------------------AGCTCAGGAGGGATAGCGCC 	71
---------------------------------GCTCAGGAGGGATAGCGCCA 	2
----------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR390c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM852280	AAGCTCAGGAGGGATAGCGCC	CGCTACCCATCCTGAGTTTCA	up	1	2

Secondary structure

TTCCTACTTTTTCAGTGTGGAAGAATTTGTAAAGCTCAGGAGGGATAGCGCCATGGAAGGTCTTTCTACTAATTTGCTCTATCATGGGTGCTTTGGTTTCGATCGATCTTCTCTAGCGCTACCCATCCTGAGTTTCATGGTTTCTTCATACTTTTCATAGCTTCA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	430
-------------------------------AAGCTCAGGAGGGATAGCGC 	5
--------------------------------AGCTCAGGAGGGATAGCGCC 	71
---------------------------------GCTCAGGAGGGATAGCGCCA 	2

Overlaps with miRBase pre-miRNAs: gma-MIR390e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM852280	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACGACACTCATGATTTTCACATCATAGTGTATTTGGCGCTATCTATCCTGAGTTTCACGGGTTTTTCTTACTGTA
--------AGAAGAATCTGTAAAGCTCAGGAG 	1
---------GAAGAATCTGTAAAGCTCAGGAGG 	1
-----------AGAATCTGTAAAGCTCAGGAGGGA 	1
---------------------AAGCTCAGGAGGGATAGCGCC 	430
---------------------AAGCTCAGGAGGGATAGCGC 	5
----------------------AGCTCAGGAGGGATAGCGCC 	71
-----------------------GCTCAGGAGGGATAGCGCCA 	2

Overlaps with miRBase pre-miRNAs: gma-MIR390g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543394	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACAACACTCATGATTTTATATCATAATATATTTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACGGGA
---------------------AAGCTCAGGAGGGATAGCGCC 	340
----------------------AGCTCAGGAGGGATAGCGCC 	42

Overlaps with miRBase pre-miRNAs: gma-MIR390f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543394	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

TTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCTTCACAC
---------------------AAGCTCAGGAGGGATAGCGCC 	340
----------------------AGCTCAGGAGGGATAGCGCC 	42
------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	14
------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	10

Overlaps with: MNEST040467 MNEST040468
Overlaps with miRBase pre-miRNAs: gma-MIR390a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Glycine max	GSM543394	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

GCTCTTGTTTTTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTCTTCTCCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCCACACACAATGGAAGAA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	340
--------------------------------AGCTCAGGAGGGATAGCGCC 	42
----------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	14
----------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	10

Overlaps with miRBase pre-miRNAs: gma-MIR390c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Glycine max	GSM543394	AAGCTCAGGAGGGATAGCGCC	CGCTACCCATCCTGAGTTTCA	up	1	2

Secondary structure

TTCCTACTTTTTCAGTGTGGAAGAATTTGTAAAGCTCAGGAGGGATAGCGCCATGGAAGGTCTTTCTACTAATTTGCTCTATCATGGGTGCTTTGGTTTCGATCGATCTTCTCTAGCGCTACCCATCCTGAGTTTCATGGTTTCTTCATACTTTTCATAGCTTCA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	340
--------------------------------AGCTCAGGAGGGATAGCGCC 	42

Overlaps with miRBase pre-miRNAs: gma-MIR390e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Glycine max	GSM543394	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACGACACTCATGATTTTCACATCATAGTGTATTTGGCGCTATCTATCCTGAGTTTCACGGGTTTTTCTTACTGTA
---------------------AAGCTCAGGAGGGATAGCGCC 	340
----------------------AGCTCAGGAGGGATAGCGCC 	42

Overlaps with miRBase pre-miRNAs: gma-MIR390g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Glycine max	GSM543393	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACAACACTCATGATTTTATATCATAATATATTTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACGGGA
---------------------AAGCTCAGGAGGGATAGCGCC 	349
---------------------AAGCTCAGGAGGGATAGCGC 	8
----------------------AGCTCAGGAGGGATAGCGCC 	80

Overlaps with miRBase pre-miRNAs: gma-MIR390f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Glycine max	GSM543393	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

TTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCTTCACAC
---------------------AAGCTCAGGAGGGATAGCGCC 	349
---------------------AAGCTCAGGAGGGATAGCGC 	8
----------------------AGCTCAGGAGGGATAGCGCC 	80
------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	25
------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	14

Overlaps with: MNEST040467 MNEST040468
Overlaps with miRBase pre-miRNAs: gma-MIR390a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Glycine max	GSM543393	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

GCTCTTGTTTTTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTCTTCTCCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCCACACACAATGGAAGAA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	349
-------------------------------AAGCTCAGGAGGGATAGCGC 	8
--------------------------------AGCTCAGGAGGGATAGCGCC 	80
----------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	25
----------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	14

Overlaps with miRBase pre-miRNAs: gma-MIR390c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Glycine max	GSM543393	AAGCTCAGGAGGGATAGCGCC	CGCTACCCATCCTGAGTTTCA	up	1	2

Secondary structure

TTCCTACTTTTTCAGTGTGGAAGAATTTGTAAAGCTCAGGAGGGATAGCGCCATGGAAGGTCTTTCTACTAATTTGCTCTATCATGGGTGCTTTGGTTTCGATCGATCTTCTCTAGCGCTACCCATCCTGAGTTTCATGGTTTCTTCATACTTTTCATAGCTTCA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	349
-------------------------------AAGCTCAGGAGGGATAGCGC 	8
--------------------------------AGCTCAGGAGGGATAGCGCC 	80

Overlaps with miRBase pre-miRNAs: gma-MIR390e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Glycine max	GSM543393	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACGACACTCATGATTTTCACATCATAGTGTATTTGGCGCTATCTATCCTGAGTTTCACGGGTTTTTCTTACTGTA
---------------------AAGCTCAGGAGGGATAGCGCC 	349
---------------------AAGCTCAGGAGGGATAGCGC 	8
----------------------AGCTCAGGAGGGATAGCGCC 	80

Overlaps with miRBase pre-miRNAs: gma-MIR390g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Glycine max	GSM543395	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACAACACTCATGATTTTATATCATAATATATTTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACGGGA
---------------------AAGCTCAGGAGGGATAGCGCC 	825
---------------------AAGCTCAGGAGGGATAGCGC 	10
----------------------AGCTCAGGAGGGATAGCGCC 	45
-------------------------TCAGGAGGGATAGCGCCACAA 	33
-------------------------TCAGGAGGGATAGCGCCACA 	6
-------------------------------------------------------------------------TTGGCGCTATCTATCCTGAGT 	10

Overlaps with miRBase pre-miRNAs: gma-MIR390f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Glycine max	GSM543395	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

TTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCTTCACAC
---------------------AAGCTCAGGAGGGATAGCGCC 	825
---------------------AAGCTCAGGAGGGATAGCGC 	10
----------------------AGCTCAGGAGGGATAGCGCC 	45

Overlaps with: MNEST040467 MNEST040468
Overlaps with miRBase pre-miRNAs: gma-MIR390a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Glycine max	GSM543395	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

GCTCTTGTTTTTTAGTGTGGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGATCTCTTCTCCACTCTTGATCTTCTCTTGCGCTATCCATCCTGAGTTTCATGGCTTCTATCCACACACAATGGAAGAA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	825
-------------------------------AAGCTCAGGAGGGATAGCGC 	10
--------------------------------AGCTCAGGAGGGATAGCGCC 	45

Overlaps with miRBase pre-miRNAs: gma-MIR390c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Glycine max	GSM543395	AAGCTCAGGAGGGATAGCGCC	CGCTACCCATCCTGAGTTTCA	up	1	2

Secondary structure

TTCCTACTTTTTCAGTGTGGAAGAATTTGTAAAGCTCAGGAGGGATAGCGCCATGGAAGGTCTTTCTACTAATTTGCTCTATCATGGGTGCTTTGGTTTCGATCGATCTTCTCTAGCGCTACCCATCCTGAGTTTCATGGTTTCTTCATACTTTTCATAGCTTCA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	825
-------------------------------AAGCTCAGGAGGGATAGCGC 	10
--------------------------------AGCTCAGGAGGGATAGCGCC 	45

Overlaps with miRBase pre-miRNAs: gma-MIR390e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Glycine max	GSM543395	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GAGAGTACAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCACGACACTCATGATTTTCACATCATAGTGTATTTGGCGCTATCTATCCTGAGTTTCACGGGTTTTTCTTACTGTA
---------------------AAGCTCAGGAGGGATAGCGCC 	825
---------------------AAGCTCAGGAGGGATAGCGC 	10
----------------------AGCTCAGGAGGGATAGCGCC 	45
-------------------------TCAGGAGGGATAGCGCCACGA 	6
--------------------------------------------------------------------------TTGGCGCTATCTATCCTGAGT 	10

Overlaps with miRBase pre-miRNAs: gma-MIR390g
HuntMi prediction: true miRNA