miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCTCAGGAGGGATAGCGCC

selected species: Oryza sativa



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	65
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	4
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	1
--------------------------------------------------------------ACTAGGCGCTATCTATCCTGAG 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	1
------------------------------------------------------------------GGCGCTATCTATCCTGAGCTCCA 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	6


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
--------------------AACAATCCTTGAAGCTCAGGA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	148
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	5
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	4
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
-------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTC 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	6
--------------------------------AGCTCAGGAGGGATAGCGCCT 	3
--------------------------------AGCTCAGGAGGGATAGCGC 	1
---------------------------------GCTCAGGAGGGATAGCGCCT 	1
---------------------------------GCTCAGGAGGGATAGCGCC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTC 	5
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	3
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAG 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	9
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	4


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	6


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686040-31373 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
----TTGAGGAAGGGTATGGAACAATC 	1
--------------------AACAATCCTTGAAGCTCAGGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	6
-------------------------------AAGCTCAGGAGGGATAGCGCCTC 	6
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	34
-------------------------------AAGCTCAGGAGGGATAGCGCC 	2389
-------------------------------AAGCTCAGGAGGGATAGCGC 	88
-------------------------------AAGCTCAGGAGGGATAGCG 	67
--------------------------------AGCTCAGGAGGGATAGCGCCT 	130
--------------------------------AGCTCAGGAGGGATAGCGCC 	224
--------------------------------AGCTCAGGAGGGATAGCGC 	3
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGCTCC 	1
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	20
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	17
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTC 	13
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCT 	3
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGC 	6
-----------------------------------------------------------------AGGCGCTATCTATCCTGAG 	10
------------------------------------------------------------------GGCGCTATCTATCCTGAGCTCCA 	1
------------------------------------------------------------------GGCGCTATCTATCCTGAGC 	1
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTCCA 	3
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTCC 	10
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTC 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	57
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	30
--------------------------------------------------------------------CGCTATCTATCCTGAGCTC 	3
---------------------------------------------------------------------GCTATCTATCCTGAGCTCCA 	4
---------------------------------------------------------------------GCTATCTATCCTGAGCTCC 	2


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520640-18679 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
--------------------AACAATCCTTGAAGCTCAGGAGGG 	1
--------------------AACAATCCTTGAAGCTCAGGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	8
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	2
------------------------------------CAGGAGGGATAGCGCCTCGA 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	2
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTCC 	1
-------------------------------------------------------------------GCGCTATCTATCCTGAGCT 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	2
---------------------------------------------------------------------GCTATCTATCCTGAGCTCCA 	1


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571077-22529 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	133
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	2
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
-------------------------------AAGCTCAGGAGGGATAGCG 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	9
--------------------------------AGCTCAGGAGGGATAGCGCCT 	2
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	4
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	4
-----------------------------------------------------------------AGGCGCTATCTATCCTGAG 	3
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTC 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	11
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	7


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686039-31370 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
--------------------AACAATCCTTGAAGCTCAGGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTCGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	34
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	39
-------------------------------AAGCTCAGGAGGGATAGCGCC 	1905
-------------------------------AAGCTCAGGAGGGATAGCGC 	90
-------------------------------AAGCTCAGGAGGGATAGCG 	78
--------------------------------AGCTCAGGAGGGATAGCGCCT 	132
--------------------------------AGCTCAGGAGGGATAGCGCC 	159
--------------------------------AGCTCAGGAGGGATAGCGC 	6
---------------------------------GCTCAGGAGGGATAGCGCC 	1
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGCTCC 	1
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGC 	2
----------------------------------------------------------------TAGGCGCTATCTATCCTGAG 	3
----------------------------------------------------------------TAGGCGCTATCTATCCTGA 	2
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	19
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	34
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTC 	41
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCT 	16
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGC 	7
-----------------------------------------------------------------AGGCGCTATCTATCCTGAG 	40
------------------------------------------------------------------GGCGCTATCTATCCTGAGCTCC 	1
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTCCA 	3
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTCC 	19
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTC 	1
-------------------------------------------------------------------GCGCTATCTATCCTGAGCT 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCAT 	2
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	217
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	112
--------------------------------------------------------------------CGCTATCTATCCTGAGCTC 	2
---------------------------------------------------------------------GCTATCTATCCTGAGCTCCA 	8
---------------------------------------------------------------------GCTATCTATCCTGAGCTCC 	5


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520636-18672 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	124
-------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGC 	4
-------------------------------AAGCTCAGGAGGGATAGCGCCTC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	5
--------------------------------AGCTCAGGAGGGATAGCGCC 	1
------------------------------------CAGGAGGGATAGCGCCTCG 	1
----------------------------------------------------------------TAGGCGCTATCTATCCTGAGCTCC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	1


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520635-18669 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
------------------GGAACAATCCTTGAAGCTCAGGA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCTCG 	16
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	11
-------------------------------AAGCTCAGGAGGGATAGCGCC 	195
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCTCGA 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	1
-------------------------------------------------------------AACTAGGCGCTATCTATCCTGAGC 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	43
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	4
-------------------------------------------------------------------GCGCTATCTATCCTGAGCTC 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	1


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM693279 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
-------------------------------AAGCTCAGGAGGGATAGCGCC 	212
-------------------------------AAGCTCAGGAGGGATAGCGCCT 	6
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
-------------------------------AAGCTCAGGAGGGATAGCG 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	4
--------------------------------AGCTCAGGAGGGATAGCGCCT 	2
-----------------------------------TCAGGAGGGATAGCGCCTCGA 	1
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCCA 	4
-----------------------------------------------------------------AGGCGCTATCTATCCTGAGCTCC 	3
-----------------------------------------------------------------AGGCGCTATCTATCCTGAG 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCCA 	1
--------------------------------------------------------------------CGCTATCTATCCTGAGCTCC 	1


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520639-18678 AAGCTCAGGAGGGATAGCGCC CGCTATCTATCCTGAGCTCCA up 2 0


Secondary structure

TGTTTTGAGGAAGGGTATGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTCGAAATCAAACTAGGCGCTATCTATCCTGAGCTCCATGGTTTGTTCTTACCACACGACCAATTA
--------------------AACAATCCTTGAAGCTCAGGA 	4
-------------------------------AAGCTCAGGAGGGATAGCGCC 	35


Overlaps with: MNEST004766
Overlaps with miRBase pre-miRNAs: osa-MIR390
HuntMi prediction: true miRNA