miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCTCAGGAGGGATAGCGCC

selected species: Physcomitrella patens



15 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	9
-------------------------------------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCA 	6
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	264
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	8
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------GGCGTTATCCATTCTGAGCTTTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GCGTTATCCATTCTGAGCTTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	3
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	6
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	1


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
-------------------------------AAGCTCAGGAGGGATAGCGC 	9
-------------------------------AAGCTCAGGAGGGATAGCGCCCA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	1
-------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	264
--------------------------------AGCTCAGGAGGGATAGCGCCC 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	10
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	12



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
-------------------------------AAGCTCAGGAGGGATAGCGCC 	50
-------------------------------AAGCTCAGGAGGGATAGCGC 	2
--------------------------------AGCTCAGGAGGGATAGCGCC 	24
--------------------------------AGCTCAGGAGGGATAGCGC 	1
---------------------------------GCTCAGGAGGGATAGCGCC 	14
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	32
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	1
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	1
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313213 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCATT 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	271
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	8
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	6
---------------------------------------------------------------GCTCAGGAGGGATAGCGCCA 	1
---------------------------------------------------------------GCTCAGGAGGGATAGCGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	10
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	5
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	2


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313213 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
-------------------------------AAGCTCAGGAGGGATAGCGC 	1
-------------------------------AAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	271
--------------------------------AGCTCAGGAGGGATAGCGCC 	6
---------------------------------GCTCAGGAGGGATAGCGCC 	1
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	11
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	1
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313215 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	5
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	583
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	26
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	7
---------------------------------------------------------------GCTCAGGAGGGATAGCGCC 	1
----------------------------------------------------------------------------------ATTCTCTGTTCTTCTCTATCGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	6
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	12
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	4
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313215 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
-------------------------------AAGCTCAGGAGGGATAGCGC 	5
-------------------------------AAGCTCAGGAGGGATAGCGCCCA 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	583
--------------------------------AGCTCAGGAGGGATAGCGCC 	26
---------------------------------GCTCAGGAGGGATAGCGCC 	1
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTTG 	1
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTT 	2
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	20
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	2
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	2
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM115096 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	67
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	1
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	37
--------------------------------------------------------------AGCTCAGGAGGGATAGCGC 	1
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	7
---------------------------------------------------------------GCTCAGGAGGGATAGCGCC 	17
-------------------------------------------------------------------------------------------------------------------------------------------------GGCGTTATCCATTCTGAGCTTTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GCGTTATCCATTCTGAGCTTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	4
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	53
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	7
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	1


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM115096 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
-------------------------------AAGCTCAGGAGGGATAGCGCC 	67
-------------------------------AAGCTCAGGAGGGATAGCGC 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	37
--------------------------------AGCTCAGGAGGGATAGCGC 	1
--------------------------------AGCTCAGGAGGGATAGCGCCC 	1
---------------------------------GCTCAGGAGGGATAGCGCC 	17
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	40
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	2
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	4
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313216 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
----------------------------------------------------------ACGAAGCTCAGGAGGGATAGC 	2
----------------------------------------------------------ACGAAGCTCAGGAGGGATAGCG 	1
-----------------------------------------------------------CGAAGCTCAGGAGGGATAGCG 	3
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	11
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCATTC 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCG 	5
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCA 	11
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	754
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	11
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	39
--------------------------------------------------------------------------------------------------------------------------------------------------GCGTTATCCATTCTGAGCTTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	9
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	32
----------------------------------------------------------------------------------------------------------------------------------------------------GTTATCCATTCTGAGCTTTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------GTTATCCATTCTGAGCTTT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	10
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313216 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
----------------------------ACGAAGCTCAGGAGGGATAGC 	2
----------------------------ACGAAGCTCAGGAGGGATAGCG 	1
-----------------------------CGAAGCTCAGGAGGGATAGCG 	3
-------------------------------AAGCTCAGGAGGGATAGCGC 	11
-------------------------------AAGCTCAGGAGGGATAGCG 	5
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	3
-------------------------------AAGCTCAGGAGGGATAGCGCC 	754
--------------------------------AGCTCAGGAGGGATAGCGCC 	39
-------------------------------------AGGAGGGATAGCGCCCAGCC 	1
----------------------------------------------------------------------------------AGTGCTTCTGATAGTAAGATGC 	1
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTT 	2
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	10
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	105
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTT 	1
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	4
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313214 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
----------------------------------------------------------ACGAAGCTCAGGAGGGATAG 	1
----------------------------------------------------------ACGAAGCTCAGGAGGGATAGC 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	11
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCA 	6
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	898
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	56
--------------------------------------------------------------AGCTCAGGAGGGATAGCGC 	2
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	5
---------------------------------------------------------------GCTCAGGAGGGATAGCGCC 	2
---------------------------------------------------------------------------TAGCGCCATTCTCTGTTCTTC 	1
----------------------------------------------------------------------------------ATTCTCTGTTCTTCTCTATCGA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GCGTTATCCATTCTGAGCTTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	10
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	30
----------------------------------------------------------------------------------------------------------------------------------------------------GTTATCCATTCTGAGCTTTG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	7
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313214 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
----------------------------ACGAAGCTCAGGAGGGATAG 	1
----------------------------ACGAAGCTCAGGAGGGATAGC 	1
-------------------------------AAGCTCAGGAGGGATAGCGC 	11
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	898
--------------------------------AGCTCAGGAGGGATAGCGCC 	56
--------------------------------AGCTCAGGAGGGATAGCGC 	2
---------------------------------GCTCAGGAGGGATAGCGCC 	2
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	13
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTT 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	104
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	7
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	1
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313217 AAGCTCAGGAGGGATAGCGCC CGTTATCCATTCTGAGCTTTG up 1 0


Secondary structure

CAGCTCGCCAAGAGATTGCAGCCTGAAGATGAAGTGGTTCCTCTTGCATGATACAATTACGAAGCTCAGGAGGGATAGCGCCATTCTCTGTTCTTCTCTATCGACACTTGGTAAACCAGCTTGTGCTAGCTATGGGCAGAGATATGGCGTTATCCATTCTGAGCTTTGCAAGTGTCTCGTGCTTACACAACTTTCAGCTCGGGTTTCTTCTCTTCCAACTCTCCTG
----------------------------------------------------------ACGAAGCTCAGGAGGGATAGC 	1
----------------------------------------------------------ACGAAGCTCAGGAGGGATAGCG 	1
-----------------------------------------------------------CGAAGCTCAGGAGGGATAGCG 	1
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGC 	12
-------------------------------------------------------------AAGCTCAGGAGGGATAGCG 	2
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCCA 	7
-------------------------------------------------------------AAGCTCAGGAGGGATAGCGCC 	749
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCCA 	9
--------------------------------------------------------------AGCTCAGGAGGGATAGCGCC 	29
--------------------------------------------------------------------------------------------------------------------------------------------------GCGTTATCCATTCTGAGCTTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTT 	8
---------------------------------------------------------------------------------------------------------------------------------------------------CGTTATCCATTCTGAGCTTTG 	28
----------------------------------------------------------------------------------------------------------------------------------------------------GTTATCCATTCTGAGCTTTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------GTTATCCATTCTGAGCTTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTATCCATTCTGAGCTTTGCA 	7
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	2


Overlaps with: MNEST039485 MNEST051391
Overlaps with miRBase pre-miRNAs: ppt-MIR390a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313217 AAGCTCAGGAGGGATAGCGCC CGCTATCCATTCTGAGCTTTG up 3 0


Secondary structure

GGACATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGCAGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACC
----------------------------ACGAAGCTCAGGAGGGATAGC 	1
----------------------------ACGAAGCTCAGGAGGGATAGCG 	1
-----------------------------CGAAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGC 	12
-------------------------------AAGCTCAGGAGGGATAGCG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCC 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	749
--------------------------------AGCTCAGGAGGGATAGCGCC 	29
-----------------------------------------------------------------------------------------------------------------ACGCTATCCATTCTGAGCTTTG 	1
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTT 	9
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTT 	3
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTGC 	2
------------------------------------------------------------------------------------------------------------------CGCTATCCATTCTGAGCTTTG 	93
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTTG 	1
-------------------------------------------------------------------------------------------------------------------GCTATCCATTCTGAGCTTT 	1
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCA 	1
---------------------------------------------------------------------------------------------------------------------TATCCATTCTGAGCTTTGCAA 	2



HuntMi prediction: true miRNA