miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAGCTCAGGAGGGATAGCGCC

selected species: Vitis vinifera

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GTCGGTGAACCTCAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGAGCCATGATGAAAATGATTGTTGAGTTGAAAATTTTTTCTAGCTTGTTTTTTGGGTCATCATTTTGTGTGTGTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACTATCTCTGGTGCAG
------------------------------TAAGCTCAGGAGGGATAGCGCC 	1
------------------------------TAAGCTCAGGAGGGATAGCGC 	7
------------------------------TAAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	268
-------------------------------AAGCTCAGGAGGGATAGCGC 	6
-------------------------------AAGCTCAGGAGGGATAGCG 	1
--------------------------------AGCTCAGGAGGGATAGCGCCA 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	2

Overlaps with: MNEST041640 MNEST054848
Overlaps with miRBase pre-miRNAs: vvi-MIR390
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458927	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

ACTTGTGGTTTCTAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCACTACGCTTAAACCATTTTTATTTTTTTTGGAAATGGGTTTTTTTGGTTGTTGGTTGCGCTATCCATCCTGAGTTTCATTGGTTCTTCTTGCTCTAATGCTCTCTC
------------------------------TAAGCTCAGGAGGGATAGCGCC 	1
------------------------------TAAGCTCAGGAGGGATAGCGC 	7
------------------------------TAAGCTCAGGAGGGATAGCG 	1
-------------------------------AAGCTCAGGAGGGATAGCGCC 	268
-------------------------------AAGCTCAGGAGGGATAGCGC 	6
-------------------------------AAGCTCAGGAGGGATAGCG 	1
--------------------------------AGCTCAGGAGGGATAGCGCCA 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	2
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458930-2718	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GTCGGTGAACCTCAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGAGCCATGATGAAAATGATTGTTGAGTTGAAAATTTTTTCTAGCTTGTTTTTTGGGTCATCATTTTGTGTGTGTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACTATCTCTGGTGCAG
------------------------------TAAGCTCAGGAGGGATAGCGCC 	8
------------------------------TAAGCTCAGGAGGGATAGCGC 	65
------------------------------TAAGCTCAGGAGGGATAGC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	387
-------------------------------AAGCTCAGGAGGGATAGCGC 	19
-------------------------------AAGCTCAGGAGGGATAGCG 	2
--------------------------------AGCTCAGGAGGGATAGCGCCA 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	4
----------------------------------------------------------------------------------------------------------------------------------CGCTATCTATCCTGAGTTTCA 	2

Overlaps with: MNEST041640 MNEST054848
Overlaps with miRBase pre-miRNAs: vvi-MIR390
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458930-2718	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

ACTTGTGGTTTCTAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCACTACGCTTAAACCATTTTTATTTTTTTTGGAAATGGGTTTTTTTGGTTGTTGGTTGCGCTATCCATCCTGAGTTTCATTGGTTCTTCTTGCTCTAATGCTCTCTC
------------------------------TAAGCTCAGGAGGGATAGCGCC 	8
------------------------------TAAGCTCAGGAGGGATAGCGC 	65
------------------------------TAAGCTCAGGAGGGATAGC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCAC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	2
-------------------------------AAGCTCAGGAGGGATAGCGCC 	387
-------------------------------AAGCTCAGGAGGGATAGCGC 	19
-------------------------------AAGCTCAGGAGGGATAGCG 	2
--------------------------------AGCTCAGGAGGGATAGCGCCA 	1
--------------------------------AGCTCAGGAGGGATAGCGCC 	4
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	13
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	4

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458929-2717	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GTCGGTGAACCTCAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGAGCCATGATGAAAATGATTGTTGAGTTGAAAATTTTTTCTAGCTTGTTTTTTGGGTCATCATTTTGTGTGTGTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACTATCTCTGGTGCAG
------------------------------TAAGCTCAGGAGGGATAGCGCC 	7
------------------------------TAAGCTCAGGAGGGATAGCGC 	64
------------------------------TAAGCTCAGGAGGGATAGCG 	1
------------------------------TAAGCTCAGGAGGGATAGC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	11
-------------------------------AAGCTCAGGAGGGATAGCGCC 	753
-------------------------------AAGCTCAGGAGGGATAGCGC 	27
-------------------------------AAGCTCAGGAGGGATAGCG 	3
--------------------------------AGCTCAGGAGGGATAGCGCC 	10
--------------------------------AGCTCAGGAGGGATAGCGC 	1
----------------------------------------------------------------------------------------------------------------------------------CGCTATCTATCCTGAGTTTCAC 	1
----------------------------------------------------------------------------------------------------------------------------------CGCTATCTATCCTGAGTTTCA 	49
----------------------------------------------------------------------------------------------------------------------------------CGCTATCTATCCTGAGTTTC 	2

Overlaps with: MNEST041640 MNEST054848
Overlaps with miRBase pre-miRNAs: vvi-MIR390
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458929-2717	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

ACTTGTGGTTTCTAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCACTACGCTTAAACCATTTTTATTTTTTTTGGAAATGGGTTTTTTTGGTTGTTGGTTGCGCTATCCATCCTGAGTTTCATTGGTTCTTCTTGCTCTAATGCTCTCTC
------------------------------TAAGCTCAGGAGGGATAGCGCC 	7
------------------------------TAAGCTCAGGAGGGATAGCGC 	64
------------------------------TAAGCTCAGGAGGGATAGCG 	1
------------------------------TAAGCTCAGGAGGGATAGC 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	11
-------------------------------AAGCTCAGGAGGGATAGCGCC 	753
-------------------------------AAGCTCAGGAGGGATAGCGC 	27
-------------------------------AAGCTCAGGAGGGATAGCG 	3
--------------------------------AGCTCAGGAGGGATAGCGCC 	10
--------------------------------AGCTCAGGAGGGATAGCGC 	1
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	55
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTC 	11
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	2
---------------------------------------------------------------------------------------------------------------CTATCCATCCTGAGTTTCA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458928-2716	AAGCTCAGGAGGGATAGCGCC	CGCTATCTATCCTGAGTTTCA	up	1	0

Secondary structure

GTCGGTGAACCTCAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGAGCCATGATGAAAATGATTGTTGAGTTGAAAATTTTTTCTAGCTTGTTTTTTGGGTCATCATTTTGTGTGTGTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTCTTACTATCTCTGGTGCAG
------------------------------TAAGCTCAGGAGGGATAGCGCC 	20
------------------------------TAAGCTCAGGAGGGATAGCGC 	115
------------------------------TAAGCTCAGGAGGGATAGCG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	5
-------------------------------AAGCTCAGGAGGGATAGCGCC 	429
-------------------------------AAGCTCAGGAGGGATAGCGC 	51
-------------------------------AAGCTCAGGAGGGATAGCG 	5
--------------------------------AGCTCAGGAGGGATAGCGCC 	14
--------------------------------AGCTCAGGAGGGATAGCGC 	2

Overlaps with: MNEST041640 MNEST054848
Overlaps with miRBase pre-miRNAs: vvi-MIR390
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458928-2716	AAGCTCAGGAGGGATAGCGCC	CGCTATCCATCCTGAGTTTCA	up	2	0

Secondary structure

ACTTGTGGTTTCTAGTATGGGAGAATCTGTTAAGCTCAGGAGGGATAGCGCCACTACGCTTAAACCATTTTTATTTTTTTTGGAAATGGGTTTTTTTGGTTGTTGGTTGCGCTATCCATCCTGAGTTTCATTGGTTCTTCTTGCTCTAATGCTCTCTC
------------------------------TAAGCTCAGGAGGGATAGCGCC 	20
------------------------------TAAGCTCAGGAGGGATAGCGC 	115
------------------------------TAAGCTCAGGAGGGATAGCG 	2
-------------------------------AAGCTCAGGAGGGATAGCGCCACT 	1
-------------------------------AAGCTCAGGAGGGATAGCGCCA 	5
-------------------------------AAGCTCAGGAGGGATAGCGCC 	429
-------------------------------AAGCTCAGGAGGGATAGCGC 	51
-------------------------------AAGCTCAGGAGGGATAGCG 	5
--------------------------------AGCTCAGGAGGGATAGCGCC 	14
--------------------------------AGCTCAGGAGGGATAGCGC 	2
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTTCA 	5
-------------------------------------------------------------------------------------------------------------CGCTATCCATCCTGAGTTT 	1

HuntMi prediction: true miRNA