miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AAGCTGCCAGCTGAAGAACTGT

selected species: Danio rerio

10 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540644	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCACTGGCAAGCTTTA	down	0	2

Secondary structure

AAGCCACTGGCTGACCTGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTACCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTG
----------------------AGTTCTTCACTGGCAAGCTTTATGT 	1
----------------------AGTTCTTCACTGGCAAGCTTTA 	9
----------------------AGTTCTTCACTGGCAAGCTTT 	12
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	1
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	13
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	426
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	21
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	3
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	9
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	1

Overlaps with: MNEST034222
Overlaps with miRBase pre-miRNAs: dre-mir-22a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540644	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCTCTGGCAAACTTTA	down	2	2

Secondary structure

TGAATATTGGCTGACCTACCGTAGTTCTTCTCTGGCAAACTTTATGACTCTGTCTTTACGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTCAGCTTTACCCAG
----------------------AGTTCTTCTCTGGCAAACTTT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	1
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	13
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	426
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	21
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	3
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	9
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540645	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCACTGGCAAGCTTTA	down	0	2

Secondary structure

AAGCCACTGGCTGACCTGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTACCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTG
----------------------AGTTCTTCACTGGCAAGCTTTA 	49
----------------------AGTTCTTCACTGGCAAGCTTT 	33
----------------------AGTTCTTCACTGGCAAGCTT 	1
-----------------------GTTCTTCACTGGCAAGCTTTA 	1
------------------------TTCTTCACTGGCAAGCTTTATG 	2
------------------------TTCTTCACTGGCAAGCTTTA 	2
------------------------TTCTTCACTGGCAAGCTTTATGT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	5
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	6
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	19
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	4682
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	468
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	15
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	1
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	26
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	1
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	1

Overlaps with: MNEST034222
Overlaps with miRBase pre-miRNAs: dre-mir-22a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540645	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCTCTGGCAAACTTTA	down	2	2

Secondary structure

TGAATATTGGCTGACCTACCGTAGTTCTTCTCTGGCAAACTTTATGACTCTGTCTTTACGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTCAGCTTTACCCAG
----------------------AGTTCTTCTCTGGCAAACTTTA 	4
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	5
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	6
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	19
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	4682
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	468
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	15
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	1
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	26
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	1
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Danio rerio	GSM540642	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCACTGGCAAGCTTTA	down	0	2

Secondary structure

AAGCCACTGGCTGACCTGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTACCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTG
----------------------AGTTCTTCACTGGCAAGCTTTATG 	1
----------------------AGTTCTTCACTGGCAAGCTTTA 	28
----------------------AGTTCTTCACTGGCAAGCTTT 	28
----------------------AGTTCTTCACTGGCAAGCTT 	1
--------------------------------------------TGTCCTTGTGTACCAGCTA 	1
----------------------------------------------------------AGCTAAAGCTGCCAGCTGAAGAACT 	1
-----------------------------------------------------------GCTAAAGCTGCCAGCTGAAGAACTGT 	11
------------------------------------------------------------CTAAAGCTGCCAGCTGAAGAACTGT 	2
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGTT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGT 	17
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	7
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	17
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	23
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	1
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	237
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	13412
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	227
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	19
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	10
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	178
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTT 	3
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	4
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	2

Overlaps with: MNEST034222
Overlaps with miRBase pre-miRNAs: dre-mir-22a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Danio rerio	GSM540642	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCTCTGGCAAACTTTA	down	2	2

Secondary structure

TGAATATTGGCTGACCTACCGTAGTTCTTCTCTGGCAAACTTTATGACTCTGTCTTTACGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTCAGCTTTACCCAG
----------------------AGTTCTTCTCTGGCAAACTTT 	1
-----------------------------------------------------------GCTAAAGCTGCCAGCTGAAGAACTGT 	11
------------------------------------------------------------CTAAAGCTGCCAGCTGAAGAACTGT 	2
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGTT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTGT 	17
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	7
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	17
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	23
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	1
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	237
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	13412
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	227
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	19
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	10
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	178
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTT 	3
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	4
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Danio rerio	GSM540643	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCACTGGCAAGCTTTA	down	0	2

Secondary structure

AAGCCACTGGCTGACCTGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTACCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTG
----------------------AGTTCTTCACTGGCAAGCTTTA 	22
----------------------AGTTCTTCACTGGCAAGCTT 	1
----------------------AGTTCTTCACTGGCAAGCTTT 	1
------------------------TTCTTCACTGGCAAGCTTTA 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	5
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	3
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACT 	2
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	56
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	16930
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	23
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	585
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	33
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	5
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTGT 	2
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	1

Overlaps with: MNEST034222
Overlaps with miRBase pre-miRNAs: dre-mir-22a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Danio rerio	GSM540643	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCTCTGGCAAACTTTA	down	2	2

Secondary structure

TGAATATTGGCTGACCTACCGTAGTTCTTCTCTGGCAAACTTTATGACTCTGTCTTTACGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTCAGCTTTACCCAG
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	5
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	1
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	3
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACT 	2
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	56
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	16930
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	23
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	585
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	33
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGT 	5
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTGT 	2
------------------------------------------------------------------CTGCCAGCTGAAGAACTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Danio rerio	GSM540646	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCACTGGCAAGCTTTA	down	0	2

Secondary structure

AAGCCACTGGCTGACCTGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTACCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTG
----------------------AGTTCTTCACTGGCAAGCTTTAT 	2
----------------------AGTTCTTCACTGGCAAGCTTT 	93
----------------------AGTTCTTCACTGGCAAGCTT 	1
----------------------AGTTCTTCACTGGCAAGCTTTA 	338
-----------------------GTTCTTCACTGGCAAGCTTTA 	11
------------------------TTCTTCACTGGCAAGCTTTA 	2
------------------------TTCTTCACTGGCAAGCTTTATGT 	1
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	2
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	7
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	2
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	26
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	261
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	23726
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	2129
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	53
---------------------------------------------------------------AAGCTGCCAGCTGAAGAAC 	2
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	125
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTTG 	1
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	2
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	8
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTGT 	9
------------------------------------------------------------------CTGCCAGCTGAAGAACTGTT 	1

Overlaps with: MNEST034222
Overlaps with miRBase pre-miRNAs: dre-mir-22a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Danio rerio	GSM540646	AAGCTGCCAGCTGAAGAACTGT	AGTTCTTCTCTGGCAAACTTTA	down	2	2

Secondary structure

TGAATATTGGCTGACCTACCGTAGTTCTTCTCTGGCAAACTTTATGACTCTGTCTTTACGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTCAGCTTTACCCAG
----------------------AGTTCTTCTCTGGCAAACTTTA 	34
----------------------AGTTCTTCTCTGGCAAACTTT 	4
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACTG 	2
-------------------------------------------------------------TAAAGCTGCCAGCTGAAGAACT 	7
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTGT 	2
--------------------------------------------------------------AAAGCTGCCAGCTGAAGAACTG 	26
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGTT 	261
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTGT 	23726
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACTG 	2129
---------------------------------------------------------------AAGCTGCCAGCTGAAGAACT 	53
---------------------------------------------------------------AAGCTGCCAGCTGAAGAAC 	2
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGT 	125
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTTG 	1
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTG 	2
----------------------------------------------------------------AGCTGCCAGCTGAAGAACTGTT 	8
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTG 	1
-----------------------------------------------------------------GCTGCCAGCTGAAGAACTGTTGT 	9
------------------------------------------------------------------CTGCCAGCTGAAGAACTGTT 	1

HuntMi prediction: true miRNA