miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGCTGCCAGTTGAAGAACTGT

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 AAGCTGCCAGTTGAAGAACTGT AGTTCTTCAGTGGCAAGCTTTA down 0 2


Secondary structure

CCGCTCCTGGCTGCCCGGCAGCAGTTCTTCAGTGGCAAGCTTTATGTCCTTCTCTAGTAGCTAAAGCTGCCAGTTGAAGAACTGTTGAATGTAGCCACGTTCAT
----------------------AGTTCTTCAGTGGCAAGCTTT 	4
----------------------AGTTCTTCAGTGGCAAGCTTTA 	13
-----------------------GTTCTTCAGTGGCAAGCTTT 	1
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACTG 	5
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACT 	5
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGTT 	9
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGT 	294

Overlaps with: MNEST006806
Overlaps with miRBase pre-miRNAs: gga-mir-22
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 AAGCTGCCAGTTGAAGAACTGT AGTTCTTCAGTGGCAAGCTTTA down 0 2


Secondary structure

CCGCTCCTGGCTGCCCGGCAGCAGTTCTTCAGTGGCAAGCTTTATGTCCTTCTCTAGTAGCTAAAGCTGCCAGTTGAAGAACTGTTGAATGTAGCCACGTTCAT
----------------------AGTTCTTCAGTGGCAAGCTTTA 	18
----------------------AGTTCTTCAGTGGCAAGCTT 	1
----------------------AGTTCTTCAGTGGCAAGCTTT 	14
-----------------------GTTCTTCAGTGGCAAGCTTT 	1
-----------------------GTTCTTCAGTGGCAAGCTTTA 	1
---------------------------------------------------------------AAGCTGCCAGTTGAAGAAC 	2
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACT 	28
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGT 	207
---------------------------------------------------------------AAGCTGCCAGTTGAAGAACTG 	4

Overlaps with: MNEST006806
Overlaps with miRBase pre-miRNAs: gga-mir-22
HuntMi prediction: true miRNA