miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGGAACGTTAAAAACCATTGT

selected species: Acyrthosiphon pisum



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant AAGGAACGTTAAAAACCATTGT AATGGTGTTTTTCGTTTCTATAA up 3 1


Secondary structure

TAAGTTCTACAGATAACAGCTTTCATTTTTTAAGGAACGTTAAAAACCATTGTGTATATGTTTAAATCCTTAAATGTTAAAACAACAATGGTGTTTTTCGTTTCTATAAATGATGTTAAGCACTGTCTTCAGTAATA
------------------------------TAAGGAACGTTAAAAACCATTGT 	6
------------------------------TAAGGAACGTTAAAAACCATTG 	12
------------------------------TAAGGAACGTTAAAAACCATT 	2
-------------------------------AAGGAACGTTAAAAACCATTGT 	218
-------------------------------AAGGAACGTTAAAAACCATTG 	33
-------------------------------AAGGAACGTTAAAAACCATT 	4
-------------------------------AAGGAACGTTAAAAACCAT 	1
--------------------------------------------------------------------------------------AATGGTGTTTTTCGTTTCTATAA 	2
--------------------------------------------------------------------------------------AATGGTGTTTTTCGTTTCTATA 	2

Overlaps with: MNEST035155
Overlaps with miRBase pre-miRNAs: api-mir-3051-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Acyrthosiphon pisum GSM502519_unique_quant AAGGAACGTTAAAAACCATTGT AATGGTGTTTTTCGTTTCTATAA up 3 1


Secondary structure

AATAAACAGCTTTCATTTTTTAAGGAACGTTAAAAACCATTGTGTATATGTTTGAATCCTTAACTTTTACAACGACAATGGTGTTTTTCGTTTCTATAAATGATGTTAAGCACTGTC
--------------------TAAGGAACGTTAAAAACCATTGT 	6
--------------------TAAGGAACGTTAAAAACCATTG 	12
--------------------TAAGGAACGTTAAAAACCATT 	2
---------------------AAGGAACGTTAAAAACCATTGT 	218
---------------------AAGGAACGTTAAAAACCATTG 	33
---------------------AAGGAACGTTAAAAACCATT 	4
---------------------AAGGAACGTTAAAAACCAT 	1
----------------------------------------------------------------------------AATGGTGTTTTTCGTTTCTATAA 	2
----------------------------------------------------------------------------AATGGTGTTTTTCGTTTCTATA 	2

Overlaps with: MNEST035156
Overlaps with miRBase pre-miRNAs: api-mir-3051-2
HuntMi prediction: true miRNA