miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGGTAGATAGAACAGGTCTTG

selected species: Sus scrofa



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 AAGGTAGATAGAACAGGTCTTG AGACCTACTTTTCTACCAACA up 4 3


Secondary structure

TCCTAAATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAGATGAATTCAAGACCTACTTTTCTACCAACAGCAATTAC
-----------AAGGTAGATAGAACAGGTCTTGT 	1
-----------AAGGTAGATAGAACAGGTCTTG 	7
-----------AAGGTAGATAGAACAGGTC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636848 AAGGTAGATAGAACAGGTCTTG AGACCTACTTTTCTACCAACA up 4 3


Secondary structure

TCCTAAATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAGATGAATTCAAGACCTACTTTTCTACCAACAGCAATTAC
--------GAAAAGGTAGATAGAACAGG 	1
-----------AAGGTAGATAGAACAGGTCTTG 	62
-----------AAGGTAGATAGAACAGGTCTT 	4
-----------AAGGTAGATAGAACAGGTCTTGT 	14
-----------AAGGTAGATAGAACAGGTCT 	2
------------AGGTAGATAGAACAGGTCTTGTTT 	2
------------AGGTAGATAGAACAGGTCTTGTT 	1
------------AGGTAGATAGAACAGGTCTTG 	16
------------AGGTAGATAGAACAGGTCTTGT 	2


HuntMi prediction: true miRNA