miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AAGGTCCAACCTCACATGTCCT

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 AAGGTCCAACCTCACATGTCCT GATATATGTGGTCAGACCTATC up 5 0


Secondary structure

ATCTCCCTGAGGTTAGATGGCACTTTGGGGTTTCCTTCTGAGGAATATCAGACCTGTGGGAAAGGTCCAACCTCACATGTCCTGTATAGAATAAGGAGGGATATATGTGGTCAGACCTATCCCACAGGCCCTGTATTCTTACACAAGTGCAGAGACCTTGACATGCCATCTGATCTTCA
-------------------------------------------------------------AAGGTCCAACCTCACATGTCC 	1
-------------------------------------------------------------AAGGTCCAACCTCACATGTCCT 	72
--------------------------------------------------------------AGGTCCAACCTCACATGTCCT 	1
---------------------------------------------------------------------------------------------------GATATATGTGGTCAGACCTATC 	2

Overlaps with: MNEST026353
Overlaps with miRBase pre-miRNAs: gga-mir-2188
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 AAGGTCCAACCTCACATGTCCT GATATATGTGGTCAGACCTATC up 5 0


Secondary structure

ATCTCCCTGAGGTTAGATGGCACTTTGGGGTTTCCTTCTGAGGAATATCAGACCTGTGGGAAAGGTCCAACCTCACATGTCCTGTATAGAATAAGGAGGGATATATGTGGTCAGACCTATCCCACAGGCCCTGTATTCTTACACAAGTGCAGAGACCTTGACATGCCATCTGATCTTCA
-------------------------------------------------------------AAGGTCCAACCTCACATGTCCT 	29

Overlaps with: MNEST026353
Overlaps with miRBase pre-miRNAs: gga-mir-2188
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 AAGGTCCAACCTCACATGTCCT GATATATGTGGTCAGACCTATC up 5 0


Secondary structure

ATCTCCCTGAGGTTAGATGGCACTTTGGGGTTTCCTTCTGAGGAATATCAGACCTGTGGGAAAGGTCCAACCTCACATGTCCTGTATAGAATAAGGAGGGATATATGTGGTCAGACCTATCCCACAGGCCCTGTATTCTTACACAAGTGCAGAGACCTTGACATGCCATCTGATCTTCA
-------------------------------------------------------------AAGGTCCAACCTCACATGTCC 	5
-------------------------------------------------------------AAGGTCCAACCTCACATGTCCT 	175
---------------------------------------------------------------------------------CTGTATAGAATAAGGAGGGA 	5
---------------------------------------------------------------------------------------------------GATATATGTGGTCAGACCTAT 	1
---------------------------------------------------------------------------------------------------GATATATGTGGTCAGACCTATC 	2
----------------------------------------------------------------------------------------------------ATATATGTGGTCAGACCTATC 	1

Overlaps with: MNEST026353
Overlaps with miRBase pre-miRNAs: gga-mir-2188
HuntMi prediction: true miRNA